| Ab1 | Abelson kinase |
| ACN | Acetonitrile |
| αSNAP | Alpha soluble N-ethylmaleimide-sensitive fusion protein attachment protein |
| ATM | Ataxia telangiectasia mutated kinase |
| CsCl | Cesium chloride |
| CDPK | Calcium dependent protein kinase |
| Cam-II | Calmodulin-dependent protein kinase II |
| CDC2 | Cell division cycle protein kinase p34 |
| CDK | Cyclin-dependent kinase |
| cis-SNARE | cis-soluble N-ethylmaleimide sensitive factor attachment protein receptor |
| CKI | Casein kinase I |
| CKII | Casein kinase II |
| CV | Coefficient of variation |
| MAPK | Cyclin-dependent kinase of mitogen-activated protein kinase |
| GRAs | Dense granule proteins |
| DEPs | Differentially expressed phosphopeptides |
| DTT | Dithiothreitol |
| EGFR | Epithelial growth factor receptor |
| FDR | False-discovery rate |
| FA | Formic acid |
| GO | Gene ontology |
| IKK | ikappab kinase |
| INSR | Insulin receptor |
| Jak | Janus kinase |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| MAPK | Mitogen-activated protein kinase |
| OG | Orthologous groups |
| OWP | Oocyst wall protein |
| PBS | Phosphate-buffered saline |
| PKA | Camp-dependent protein kinase |
| PKB | Protein kinase B |
| PKC | Protein kinase C |
| PKG | cGMP-dependent protein kinase |
| PTM | Posttranslational modification |
| ROPs | Rhoptry proteins |
| RP | ribosomal protein |
| STRING | Search tool for the retrieval of interacting genes/protein |
| SDZ | Sulfadiazine |
| SAGE | Serial analysis of gene expression |
| SPF | Specific pathogen free |
| Src | Sarcoma gene kinase |
| Syk | Cytoplasmic tyrosine kinases |