TABLE 3.
Homology between samples sequenced in this work and sequences of different rabies-related lyssaviruses obtained from genomic databasesa
| Virusb | % Homology with isolate from:
|
||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Dog
|
Horse | Bat
|
|||||||||||||||
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | ||
| RABV (France) | 93.6 | 94.1 | 94.1 | 95 | 95 | 95 | 94.5 | 93.6 | 94.5 | 77.7 | 77.3 | 77.7 | 77.3 | 77.7 | 69.1 | 77.3 | 77.3 |
| RABV (Morocco) | 100 | 98.2 | 98.2 | 99.1 | 99.1 | 99.1 | 99.5 | 100 | 98.6 | 75.5 | 74.5 | 75.5 | 75 | 75.5 | 66.8 | 75 | 75 |
| LBV | 75 | 75.5 | 75 | 75 | 75 | 75 | 75.5 | 75 | 74.5 | 75 | 74.1 | 75.5 | 75 | 75 | 66.4 | 75.5 | 75.5 |
| MOKV | 68.6 | 70 | 70 | 69.5 | 69.5 | 69.5 | 69.1 | 68.6 | 69.5 | 70.5 | 70 | 70 | 70 | 70.5 | 61.8 | 70.5 | 70.9 |
| DUVV | 75.5 | 75 | 76.8 | 75.9 | 75.9 | 75.9 | 75.9 | 75.5 | 75.9 | 78.6 | 77.7 | 79.1 | 78.6 | 78.6 | 69.5 | 78.6 | 78.2 |
| EBV1a | 75 | 76.4 | 76.4 | 76.4 | 76.4 | 76.4 | 77.3 | 75 | 76.4 | 98.2 | 97.3 | 97.7 | 98.6 | 98.2 | 89.5 | 97.7 | 97.7 |
| EBV1b | 76.4 | 77.7 | 77.7 | 77.7 | 77.7 | 77.7 | 74.5 | 76.4 | 77.7 | 99.5 | 99.1 | 99.1 | 99.1 | 99.5 | 90.9 | 99.1 | 99.1 |
| EBV2a | 73.6 | 74.1 | 74.5 | 75 | 75 | 75 | 75.5 | 73.6 | 75 | 80.5 | 80.9 | 80.9 | 80.5 | 80.5 | 70.5 | 80.5 | 80 |
| EBV2b | 74 | 75 | 75.5 | 75.9 | 75.9 | 75.9 | 75.5 | 74.5 | 75.9 | 80 | 80.5 | 80.5 | 80 | 80 | 70 | 80 | 79.5 |
a
All strains were obtained from the brain except for those from bats 6, 7 and 8, which were amplified from oropharyngeal swabs.