Table 2.

Simulated gene fusions called by Genion and LongGF

Gene1	Gene2	Genion	LongGF	Gene1	Gene2	Genion	LongGF
TCF3	PBX1	$✓$	$✓$	KMT2A	MLLT3	$✓$	$✓$
JAZF1	SUZ12	$✓$	$✓$	BCR	ABL1	$✓$	$✓$
DNAJB1	PRKACA	$✓$	$✓$	TMPRSS2	ERG	$✓$	✗
KIAA1549	BRAF	$✓$	$✓$	CCDC6	RET	$✓$	$✓$
NAB2	STAT6	✗	✗	CBFA2T3	GLIS2	$✓$	$✓$
EWSR1	FLI1	$✓$	$✓$	PML	RARA	$✓$	$✓$
SS18	SSX1	$✓$	$✓$	RUNX1	RUNX1T1	$✓$	$✓$
COL1A1	PDGFB	$✓$	$✓$	CRTC1	MAML2	$✓$	$✓$