Slices shown (left to right) (
i) midline sagittal, (ii) coronal through the PAG, bilateral LC and RVM masks, and (iii) axial at the level of the midline RVM mask. To allow visualisation of underlying anatomy, data were thresholded at an
uncorrected p-value of 0.05 (i.e. Z > 1.65). The location of relevant masks are outlined in white, with labels shown. Also included is the brainstem mask derived from the Harvard-Oxford sub-cortical probabilistic atlas, which was thresholded at 50% and used for estimating brainstem activity reported in the manuscript (rather than the whole brain analysis shown here). Assignment of activity to specific nuclei was based on overlap with probabilistic brainstem nuclei masks (
Brooks et al., 2017). Positive Z-scores are shown in Red-Yellow colours, whilst negative ones are in Blue-Light blue. Activity was rarely observed in the 4th ventricle, nor in the aqueduct, indicating that physiological noise was adequately corrected for with the chosen scheme (see
Brooks et al., 2008;
Kong et al., 2012 for more details).