. 2022 Feb 14;12:2458. doi: 10.1038/s41598-022-06422-1

Table 1.

Experimental host range matrices used to generate Phage-Bacteria Infection Networks.

References	Matrix size	Hosts		Phages	Source
Hong et al. (2013)^a	21	Salmonella gallinarum	7	3	Sewage, laboratory
Shende et al. (2017)^a	40	Escherichia coli, Bacillus subtilis	8	5	Manure, sewage water
Mizuno et al. (2020)^b	64	Citrobacter rodentium	32	2	Sewage treatment plant
Liao et al. (2019)^a	68	Escherichia coli	17	4	Non-fecal compost, laboratory
Krasowska et al. (2015)^a	76	Bacillus subtilis	19	4	Soil, laboratory
VHR1^b, James L. Van Etten lab	78	Chlorella variabilis	6	13^c	Laboratory
Gutiérrez et al. (2015)^b	90	Staphylococcus, Macrococcus caseolyticus	45	2	Sewage treatment plant
Hwang et al. (2009)^a	96	Campylobacter jejuni	16	6	Poultry, sewage, soil, laboratory
Kwiatek et al. (2015)^a	100	Pseudomonas aeruginosa	20	5	Sewage, clinical
Hammerl et al. (2016)^a	108	Brucella inopinata	36	3	Laboratory
Xie et al. (2016)^a	120	Salmonella enterica	12	10	Manure, water, soil, laboratory, cattle feedlots
Magaré et al. (2017)^a	125	Bacillus novalis, Pseudomonas aeruginosa, Staphylococcus epidermidis, Bacillus cereus, Staphylococcus aureus	5	25	Air
Álvarez et al. (2019)^a	126	Ralstonia solanacearum	42	3	River water, potatoes, laboratory
Pereira et al. (2016)^a	126	Salmonella typhimurium	42	3	Sewage, food, water, laboratory
Yu et al. (2016)^a	155	Pseudomonas syringae pv. actinidiae	31	5	Soil, kiwifruit orchards
VHR5^b, PMID: 22,936,928, 26,884,161, 10,430,569, 24,433,295, 22,834,906, 14,592,760	156	Sulfolobus strains, Pyrobaculum arsenaticum,Pyrobaculum oguniense,Sulfolubus islandicus, Acidanus strains	12	13	Acidic hot springs
Denou et al. (2009)^b	156	Escherichia coli	26	6	Human feces
Schouler et al. (2021)^b	168	Escherichia coli	56	3	Chicken fecal, recombinant phages
Gutierrez et al. (2010)^b	195	Staphylococcus epidermidis	65	3	Women’s breast milk
Dias et al. (2013)^a	200	Staphylococcus aureus	20	10	Livestock, sewage
Maura et al. (2012)^b	219	Escherichia coli	73	3	Human feces
Galtier et al. (2017)^b	219	Escherichia coli strain	73	3	Feces homogenates from murine gut samples
Alič et al. (2017)^a	220	Dickeya	55	4	Orchid, wastewater
Molina et al. (2021) (3C)^a	260	Citrobacter freundii, Citrobacter youngae, Escherichia coli, Hafnia alvei, Klebsiella pneumoniae, Lactobacillus acidophilus, Lactobacillus casei, Lactococcus lactis ssp. Lactis, Salmonella typhimurium, Enterobacter aerogenes, Serratia marcescens, Shigella boydii, Shigella flexneri, Shigella sonnei, Yersinia enterocolitica	26	10	Manure, sewage, laboratory, dairy
Salifu et al. (2013)^a	270	Rhodococcus equi	27	10	Soil, equine
Arachchi et al. (2014)^a	300	Listeria monocytogenes	50	6	Laboratory, seafood
Oh et al. (2017)^a	324	Bacillus cereus	27	12	Laboratory, fermented food, soil
Wandro et al. (2019)^a	330	Enterococcus faecium	15	22	Sewage human feces
Gunathilaka et al. (2017)^a	348	Escherichia coli	12	29	Wastewater, laboratory
Jurczak-Kurek et al. (2016)^a	360	Escherichia coli, Pseudomonas aeruginosa, Salmonella entérica, Staphylococcus sciuri, Enterococcus faecalis	60	6	Clinical, urban sewage
Litt and Jaroni (2017)^a	378	Escherichia coli	54	7	Clinical, cattle feces
Romero-Suarez et al. (2012)^a	416	Xanthomonas arboricola pv. juglandis	16	26	Walnut orchards
Wang et al. (2015)^a	451	Escherichia coli	41	11	Cattle feces, human
Murphy et al. (2013)^a	480	Lactococcus lactis	20	24	Dairy, Gouda-type cheese-producing plants Lactococcal phages
Sajben-Nagy et al. (2012)^a	544	Pseudomonas tolaasii	34	16	Laboratory, mushroom
Sekulovic et al. (2014)^b	555	Clostridium difficile	37	15	Animal and human fecal
Mangieri et al. (2020)⁵⁰	630	Escherichia coli	30	21	Cattle and sheep feces, bedding material, sewage
Galtier et al. (2016)^b	876	Escherichia coli	73	12	Sewage
Vu et al. (2019)^a	1209	Listeria	31	39	Vegetable, seafood, sivestock, foods and food processing environments
VHR14^b, Mathieu et al. (2020)	1344	Escherichia coli	84	16	Fecal samples of 1-year-old children
Molina et al. (2021) (3A)^a	1456	Escherichia coli	56	26	Livestock feces, dairy, laboratory
Petsong et al. (2019)^a	1692	Salmonella enteritidis, Salmonella typhimurium	47	36	Livestock
Jäckel et al. (2017)^a	2147	Ochrobactrum, Brucella inopinata	113	19	Laboratory
Brady et al. (2017)^a	2280	Paenibacillus larvae	40	57	Beehive
Lourenço et al. (2020)^b	2744	Escherichia coli	98	28	Sewage water, laboratory
Fong et al. (2019)⁵¹	2806	Salmonella enterica	61	46	Sediment, cattle feces, sewage effluent, irrigation water, water tanks from an aquaculture facility
Gencay et al. (2019)^a	2952	Salmonella	72	41	Laboratory, pork meat, environmental and wastewater samples
Korf et al. (2019)^a	3200	Escherichia coli	64	50	Poultry, sewage, manure, clinical
Saussereau et al. (2014)^b	8960	Pseudomonas aeruginosa	896	10	Cystic fibrosis isolates, laboratory
Mathieu et al. (2020)^a	12,450	Escherichia coli	75	166	Fecal
Total	52,688		2877	899

^aFull reference available at Molina et al. (2021) https://doi.org/10.3389/fmicb.2021.564532.

^bDownloaded from https://viralhostrangedb.pasteur.cloud/data-source/.

^cThe original matrix was trimmed to remove gaps.