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. 2022 Feb 14;8:6. doi: 10.1038/s41522-022-00268-1

Table 1.

The lasR core regulon.

Locus Tag Gene Name Locus Tag Gene Name Locus Tag Gene Name
PA14_00650 PA14_21000 PA14_40310
PA14_01490 PA14_21010 PA14_41500
PA14_01760 nuh PA14_21020 PA14_42910
PA14_02220 PA14_21030 PA14_42940
PA14_07430 PA14_26020 PA14_42950
PA14_09400 phzS PA14_30570 potF PA14_42960
PA14_09410 phzG1 PA14_30580 PA14_42970
PA14_09420 phzF1 PA14_30620 PA14_42980
PA14_09440 phzE1 PA14_30630 pqsH PA14_42990
PA14_09450 phzD1 PA14_31150 PA14_43000
PA14_09460 phzC1 PA14_31290 pa1L PA14_43020
PA14_09470 phzB1 PA14_31360 PA14_43030
PA14_09480 phzA1 PA14_32590 dipZ2 PA14_43040
PA14_09490 phzM PA14_32600 PA14_43050
PA14_09700 pqsL PA14_32610 dsbG PA14_43090
PA14_09900 prpL PA14_33290 PA14_45940 lasI
PA14_10360 PA14_33450 treA PA14_45950 rsaL
PA14_10380 PA14_34020 PA14_46510
PA14_10490 PA14_34330 PA14_46520
PA14_10500 ccoN PA14_34810 mxaA PA14_46530
PA14_10530 PA14_34820 PA14_46540
PA14_10540 fixG PA14_34830 PA14_46550
PA14_10550 cysI PA14_34840 PA14_48040 aprI
PA14_10560 PA14_34870 chiC PA14_48060 aprA
PA14_13360 PA14_36310 hcnC PA14_48090 aprF
PA14_13370 PA14_36320 hcnB PA14_48100 aprE
PA14_13380 PA14_36330 hcnA PA14_48115 aprD
PA14_13390 PA14_36530 PA14_48140 aprX
PA14_15090 - PA14_36620 PA14_49260 napB
PA14_16250 lasB PA14_36820 PA14_49310
PA14_18630 eprS PA14_37745 PA14_51350 phnB
PA14_19100 rhlA PA14_37760 PA14_51380 pqsE
PA14_19110 rhlB PA14_37770 PA14_51390 pqsD
PA14_19120 rhlR PA14_37780 PA14_51410 pqsC
PA14_19130 rhlI PA14_38260 PA14_51420 pqsB
PA14_19870 ldh PA14_39880 phzG2 PA14_51430 pqsA
PA14_19900 PA14_39890 phzF2 PA14_53250 cpbD
PA14_19910 pdhB PA14_39910 phzE2 PA14_55080
PA14_20610 lecB PA14_39925 phzD2 PA14_55940
PA14_20900 PA14_39945 phzC2 PA14_60750 pra
PA14_20920 PA14_39960 phzB2 PA14_61870
PA14_20940 - PA14_39970 phzA2 PA14_63170 cueR
PA14_20950 fabH2 PA14_40180 PA14_66840 phaC2
PA14_20960 PA14_40200 PA14_68930
PA14_20970 cyp23 PA14_40290 lasA PA14_68940
PA14_20980 PA14_40300 PA14_69560 hcpB

The core regulon was defined as the (n = 138) genes that showed a log2FC ≤ −1 (corrected p-value ≤ 0.05) in at least 19 of overall 21 lasR* compared to 28 lasRWT isolates and were significantly downregulated (log2FC ≤ −1) in PA14 ∆lasR compared to PA14 WT. Cells were grown in LB at 37 °C and 180 rpm shaking until an OD600 = 2.