Table 1.
Locus Tag | Gene Name | Locus Tag | Gene Name | Locus Tag | Gene Name |
---|---|---|---|---|---|
PA14_00650 | – | PA14_21000 | – | PA14_40310 | – |
PA14_01490 | – | PA14_21010 | – | PA14_41500 | – |
PA14_01760 | nuh | PA14_21020 | – | PA14_42910 | – |
PA14_02220 | – | PA14_21030 | – | PA14_42940 | – |
PA14_07430 | – | PA14_26020 | – | PA14_42950 | – |
PA14_09400 | phzS | PA14_30570 | potF | PA14_42960 | – |
PA14_09410 | phzG1 | PA14_30580 | – | PA14_42970 | – |
PA14_09420 | phzF1 | PA14_30620 | – | PA14_42980 | – |
PA14_09440 | phzE1 | PA14_30630 | pqsH | PA14_42990 | – |
PA14_09450 | phzD1 | PA14_31150 | – | PA14_43000 | – |
PA14_09460 | phzC1 | PA14_31290 | pa1L | PA14_43020 | – |
PA14_09470 | phzB1 | PA14_31360 | – | PA14_43030 | – |
PA14_09480 | phzA1 | PA14_32590 | dipZ2 | PA14_43040 | – |
PA14_09490 | phzM | PA14_32600 | – | PA14_43050 | – |
PA14_09700 | pqsL | PA14_32610 | dsbG | PA14_43090 | – |
PA14_09900 | prpL | PA14_33290 | – | PA14_45940 | lasI |
PA14_10360 | – | PA14_33450 | treA | PA14_45950 | rsaL |
PA14_10380 | – | PA14_34020 | – | PA14_46510 | – |
PA14_10490 | – | PA14_34330 | – | PA14_46520 | – |
PA14_10500 | ccoN | PA14_34810 | mxaA | PA14_46530 | – |
PA14_10530 | – | PA14_34820 | – | PA14_46540 | – |
PA14_10540 | fixG | PA14_34830 | – | PA14_46550 | – |
PA14_10550 | cysI | PA14_34840 | – | PA14_48040 | aprI |
PA14_10560 | – | PA14_34870 | chiC | PA14_48060 | aprA |
PA14_13360 | – | PA14_36310 | hcnC | PA14_48090 | aprF |
PA14_13370 | – | PA14_36320 | hcnB | PA14_48100 | aprE |
PA14_13380 | – | PA14_36330 | hcnA | PA14_48115 | aprD |
PA14_13390 | – | PA14_36530 | – | PA14_48140 | aprX |
PA14_15090 | - | PA14_36620 | – | PA14_49260 | napB |
PA14_16250 | lasB | PA14_36820 | – | PA14_49310 | – |
PA14_18630 | eprS | PA14_37745 | – | PA14_51350 | phnB |
PA14_19100 | rhlA | PA14_37760 | – | PA14_51380 | pqsE |
PA14_19110 | rhlB | PA14_37770 | – | PA14_51390 | pqsD |
PA14_19120 | rhlR | PA14_37780 | – | PA14_51410 | pqsC |
PA14_19130 | rhlI | PA14_38260 | – | PA14_51420 | pqsB |
PA14_19870 | ldh | PA14_39880 | phzG2 | PA14_51430 | pqsA |
PA14_19900 | – | PA14_39890 | phzF2 | PA14_53250 | cpbD |
PA14_19910 | pdhB | PA14_39910 | phzE2 | PA14_55080 | – |
PA14_20610 | lecB | PA14_39925 | phzD2 | PA14_55940 | – |
PA14_20900 | – | PA14_39945 | phzC2 | PA14_60750 | pra |
PA14_20920 | – | PA14_39960 | phzB2 | PA14_61870 | – |
PA14_20940 | - | PA14_39970 | phzA2 | PA14_63170 | cueR |
PA14_20950 | fabH2 | PA14_40180 | – | PA14_66840 | phaC2 |
PA14_20960 | – | PA14_40200 | – | PA14_68930 | – |
PA14_20970 | cyp23 | PA14_40290 | lasA | PA14_68940 | – |
PA14_20980 | – | PA14_40300 | – | PA14_69560 | hcpB |
The core regulon was defined as the (n = 138) genes that showed a log2FC ≤ −1 (corrected p-value ≤ 0.05) in at least 19 of overall 21 lasR* compared to 28 lasRWT isolates and were significantly downregulated (log2FC ≤ −1) in PA14 ∆lasR compared to PA14 WT. Cells were grown in LB at 37 °C and 180 rpm shaking until an OD600 = 2.