. 2022 Feb 14;8:6. doi: 10.1038/s41522-022-00268-1

Table 2.

Selection of upregulated genes in lasR* isolates under planktonic growth conditions as compared to lasR^WT isolates. For a complete list of regulated genes see Supplementary Data 2.

Locus Tag	Gene Name	log₂ FC	Locus Tag	Gene Name	log₂ FC	Locus Tag	Gene Name	log₂ FC
Metabolism and transport of carbon sources						Iron acquisition
PA14_02760	catI	1.41	PA14_34260	metI	1.42	PA14_01870	–	1.07
PA14_04550	glpQ	1.13	PA14_34270	metN	1.42	PA14_02410	–	1.29
PA14_09980	dkgB	1.51	PA14_34280	metQ	1.55	PA14_06160	fiuA	1.04
PA14_10590	hpcG	1.01	PA14_34360	mtlD	1.18	PA14_09970	fpvB	1.05
PA14_10600	hpaX	1.48	PA14_34370	mtlK	0.86	PA14_10170	fepB	1.39
PA14_10610	hpcD	1.08	PA14_34390	mtlG	1.45	PA14_13430	fecA	1.15
PA14_10630	hpcC	0.87	PA14_34410	mtlF	1.48	PA14_20010	hasR	1.46
PA14_10640	hpaG2	1.07	PA14_34420	mtlE	1.01	PA14_20030	hasD	1.13
PA14_10650	hpaG1	1.23	PA14_42080	fadB	1.00	PA14_20040	hasE	1.29
PA14_10900	ydjL	1.55	PA14_43420	–	1.18	PA14_32740	optS	1.20
PA14_10990	hpaC	0.92	PA14_45000	gcl	1.45	PA14_33270	pvdG	1.32
PA14_11000	hpaA	0.96	PA14_45010	hyi	1.37	PA14_33690	pvdE	2.51
PA14_11020	fabG	1.40	PA14_45020	glxR	1.07	PA14_33700	pvdF	1.45
PA14_17610	potD	1.22	PA14_45030	ttuD	1.46	PA14_33720	pvdN	1.66
PA14_17620	potC	1.41	PA14_45050	pykF	1.41	PA14_37730	–	1.63
PA14_17630	potB	1.26	PA14_47920	–	1.28	PA14_33740	pvdP	0.96
PA14_17640	potA	1.34	PA14_47930	–	1.10	PA14_37900	–	1.49
PA14_17930	glpD	1.27	PA14_47940	–	1.46	PA14_39650	cirA	3.77
PA14_23160	gltS	1.35	PA14_47960	–	1.09	PA14_39820	ufrA	1.43
PA14_23170	hutG	1.17	PA14_48000	–	1.29	PA14_55340	exbD2	1.52
PA14_23190	–	1.09	PA14_52810	dctM	1.06	PA14_55360	exbB2	1.06
PA14_26210	hisP	1.14	PA14_52820	dctQ	1.39
PA14_26220	hisM	1.33	PA14_52840	dctP	1.06	Phosphate assimilation/T2SS
PA14_26230	hisQ	1.71	PA14_52900	–	1.21	PA14_20300	phnC	1.39
PA14_26240	hisJ	1.18	PA14_63620	lipC	1.21	PA14_20320	phnD	1.57
PA14_26260	–	1.14	PA14_63640	fadH2	1.64	PA14_20330	phnE	1.58
PA14_32080	xylX	1.50	PA14_64800	vanA	2.57	PA14_20370	phnH	1.75
PA14_32100	xylY	1.50	PA14_64810	vanB	1.72	PA14_20380	phnI	1.46
			PA14_65850	rocE	1.32	PA14_20390	phnJ	1.65
						PA14_20400	phnK	1.35
Attachment			Resistance			PA14_21110	plcN	1.00
PA14_11070	cupB2	1.93	PA14_18760	mexP	1.28	PA14_21410	phoA	1.37
PA14_11080	cupB3	1.29	PA14_18780	mexQ	1.22	PA14_21620	oprP	1.53
PA14_11090	cupB4	1.35	PA14_18790	opmE	1.20	PA14_31620	-	1.40
PA14_11100	cupB5	0.97	PA14_32270	oprD3	1.71	PA14_47300	phnW	0.85
PA14_11110	cupB6	1.01	PA14_60820	oprJ	1.26	PA14_55440	hxcR	1.27
PA14_35390	pvcC	1.00	PA14_60830	mexD	1.45	PA14_55450	hxcQ	1.39
PA14_35420	pvcB	1.04	PA14_60850	mexC	1.54	PA14_55460	hxcZ	1.79
PA14_35430	pvcA	1.61	PA14_73040	amiA	2.47	PA14_55490	hxcT	0.83
PA14_36990	-	1.14				PA14_55500	hxcV	1.11
PA14_37000	cupA5	1.45
PA14_37010	cupA4	1.31	Spermidine transport			Potassium sensing
PA14_37030	cupA3	1.37	PA14_17610	potD	1.22	PA14_43370	kdpC	1.07
PA14_37040	cupA2	1.26	PA14_17620	potC	1.41	PA14_43380	kdpB	1.72
PA14_51460	cupC2	1.57	PA14_17630	potB	1.26	PA14_43400	kdpA	1.84
			PA14_17640	potA	1.34	PA14_43405	kdbF	2.34
Exopolysaccharide synthesis
PA14_24480	pelA	0.85
PA14_24550	pelF	1.18
PA14_24560	pelG	1.26