Table 1.
Features of methods employing model-based approach.
| Serial No. | Software/ Method | OS | Interface |
Programming
Language |
Link |
|---|---|---|---|---|---|
| 1 | BISCUIT | Windows, Linux | Commandline | R | https://github.com/sandhya212/BISCUIT_SingleCell_IMM_ICML_2016 |
| 2 | SAVER | Windows/Linux | Commandline | R | https://github.com/mohuangx/SAVER |
| 3 | SAVER-X | Windows/Linux and web app | Commandline | R | https://github.com/jingshuw/SAVERX, https://singlecell.wharton.upenn.edu/saver-x/ |
| 4 | ScImpute | Windows, Linux, web server GRANATUM | Commandline as well as web application | R, shiny for web server |
https://github.com/ Vivianstats/scImpute, http://garmiregroup.org/granatum/app |
| 5 | scRecover | Windows, Linux | Commandline | R | https://miaozhun.github.io/scRecover/ |
| 6 | scUnif | Windows, Linux | Commandline | Python, R | https://github.com/lingxuez/URSM |
| 7 | VIPER | Windows, Linux | Commandline | R | https://github.com/ChenMengjie/VIPER |
| 8 | scGAIN | Windows, Linux | Commandline | python | https://github.com/mgunady/scGAIN |
| 9 | bayNorm | Windows/Linux | Commandline | R | https://github.com/WT215/bayNorm |