Table 1. Disease-related Tuberculosis ImmunoPhenotype QTL (TipQTL).

Multiple QTL within the same interval and clear allele effects are designated with the same TipQTL number. p-Values are determined by Churchill-Doerge permutations (Churchill and Doerge, 1994). Column headings: QTL, quantitative trait loci; Chr, chromosome; LOD, logarithm of the odds; CEQ, chromosomal equivalents.

QTL	Trait	Chr	LOD	p value	Interval start (Mb)	Peak (Mb)	Interval end (Mb)
Tip5	Spleen CEQ	2	9.14	2.38E-02	174.29	178.25	178.25
Tip5	Spleen CFU	2	7.04	2.19E-01	73.98	174.29	180.10
Tip6	IL-9	2	8.61	4.52E-02	33.43	41.4	41.48
Tip6	IL-9	2	7.85	1.26E-01	22.77	24.62	25.65
Tip7	IL-17	15	7.84	5.27E-02	67.98	74.14	82.11
Tip8	CXCL1	7	7.57	1.06E-01	30.43	45.22	46.72
Tip8	Lung CFU	7	7.47	1.17E-01	31.06	37.78	45.22
Tip9	IL-10	17	7.16	1.85E-01	80.98	82.47	83.55
Tip10	Lung CFU	15	7.13	1.86E-01	77.00	78.16	78.70