TABLE 3.
VP7 nucleotide and amino acid sequence homologies of Nigerian G8 rotavirus strain HMG035 with other published strains
| Straina | Origin | G type | Homology (%)
|
|
|---|---|---|---|---|
| Nucleotide | Amino acid | |||
| HMG89 | Human | 8 | 97.2 | 97.2 |
| MW23 | Human | 8 | 96.0 | 96.6 |
| MW333 | Human | 8 | 96.0 | 96.9 |
| EGY1850 | Human | 8 | 89.2 | 96.9 |
| HAL1166 | Human | 8 | 84.7 | 96.0 |
| QEH14262 | Human | 8 | 88.2 | 95.1 |
| GR570/85 | Human | 8 | 91.8 | 95.4 |
| DG8 | Human | 8 | 85.0 | 94.8 |
| 69M | Human | 8 | 84.7 | 94.8 |
| B37 | Human | 8 | 83.7 | 92.9 |
| A5 | Bovine | 8 | 87.3 | 95.4 |
| Cody-1801 | Bovine | 8 | 83.1 | 94.2 |
| Wa | Human | 1 | 73.2 | 77.1 |
| S2 | Human | 2 | 72.8 | 74.8 |
| HCR3 | Human | 3 | 77.0 | 82.2 |
| HOCHI | Human | 4 | 73.4 | 72.7 |
| OSU | Porcine | 5 | 76.5 | 80.7 |
| UK | Bovine | 6 | 75.9 | 81.9 |
| 116E | Human | 9 | 76.5 | 79.4 |
| I321 | Human | 10 | 74.9 | 79.1 |
| YM | Porcine | 11 | 76.9 | 82.2 |
| L26 | Human | 12 | 75.0 | 77.3 |
| L338 | Equine | 13 | 74.0 | 75.8 |
| F123 | Equine | 14 | 74.1 | 78.8 |
a
The accession numbers of the reference sequences used in this analysis are HMG89, X98918; MW23, AJ278254; MW333, AJ278257; EGY1850, AF104102; HAL1166, L20882; QEH14262, AF143689; GR570/85, AF143688; DG8, AF034852; B37, J04334; A5, D01054; Cody-1801, U14999; Wa, K02033; S2, M11164; HCR3, L21666; HOCHI, AB012078; OSU, X04613; UK, X00896; 116E, L14072; I321, L07658; YM, M23194; L26, M58290; L338, D13549; and F123, M61876.