KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
HIF-2-alpha Antibody | Bethyl Laboratories | Cat# 179483; |
Ki67 Antibody | Cell Signaling | Cat#12202T |
Actin Antibody | Protein Tech | Cat# 60008–1-Ig |
Cleaved Caspase 3 | Cell Signaling | Cat#9661T |
Puromycin Antibody | Developmental Studies Hybridoma Bank | Cat# PMY-2A4 |
4-HNE Antibody | Bioss Antibodies | Cat# BS-6313R |
Anti-p-histone H2A | Sigma | Cat#ZMS05636 |
Bacterial and Virus Strains | ||
Wildtype L. reuteri | Robert L. Britton | N/A |
Mutant L. reuteri | Robert L. Britton | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
FG-4592 | Cayman Chemical | Cat#15294 |
N-acetyl-cysteine | Cayman Chemical | Cat#20261 |
Sodium Sulfide | Cayman Chemical | Cat#10122555 |
Cystathionine | Cayman Chemical | Cat# 16061 |
Olaparib | Cayman Chemical | Cat#10621 |
CX-5461 | Cayman Chemical | Cat#18392 |
L-Threonine | Sigma | Cat# 72-19-5 |
Ammonia Chloride | Sigma | Cat#213330 |
5-Fluorouracil | Sigma | Cat#F6627 |
L-carnitine | Sigma | Cat#21489 |
Aspartic Acid | Sigma | Cat#1043819 |
L-Glutamic Acid | Sigma | Cat#G1251 |
L-Glutamine | Sigma | Cat#G8540 |
Hydrogen Peroxide | Sigma | Cat#HX0636 |
L-Buthionine-Sulfozimine | Cayman Chemical | Cat#14484 |
Glutathione Ethyl Ester | Cayman Chemnical | Cat#14953 |
Orotic Acid | Sigma | Cat#O2750 |
Ureidosuccinic Acid | Cayman Chemical | Cat#34126 |
Deposited Data | ||
16S Sequencing | Yachida et. al, 2019 | PMID: 31171880 |
16S Sequencing | Chen et. al, 2012 | PMID: 22761885 |
16S Sequencing | Cheng Tao Pu, 2020 | PMID: 31609493 |
16S Sequencing | GEO | GSE186880 |
Experimental Models: Cell Lines | ||
NCM460 | ATCC | N/A |
HCT116 | ATCC | N/A |
MC38 | ATCC | N/A |
CT26 | ATCC | N/A |
DLD1 | ATCC | N/A |
SW480 | ATCC | N/A |
RKO | ATCC | N/A |
HF27 | ATCC | N/A |
HF29 | ATCC | N/A |
MCF10A | ATCC | N/A |
Vero2 | ATCC | N/A |
HCN2 | ATCC | N/A |
NCM356 | ATCC | N/A |
CRL1831 | ATCC | N/A |
CCD18Co | ATCC | N/A |
Experimental Models: Organisms/Strains | ||
Wildtype: C56Bl/6J | Jackson Labs | N/A |
SingleMut: CDX2-ERT2Cre; Apcfl/fl | Jackson Labs | N/A |
DoubleMut: CDX2-ERT2Cre; Apcfl/fl;Trp53fl/ | Jackson Labs | N/A |
TripleMut: Apcfl/fl;Trp53fl/fl; KrasLSLG12D | Jackson Labs | N/A |
Oligonucleotides | ||
List of primers | Supplemental Table 6 | N/A |