Table 2.

Results of logistic regression A approach (LR-A), logistic regression B approach (LR-B) and pathogenicity score (PS) on the Clinvitae test set.

	LR-A	LR-B	PS
Accuracy	0.9752	0.9780	0.9597
Precision	0.9889	0.9926	0.9941
AUC	0.9708	0.9737	0.9505
F1	0.9684	0.9720	0.9472
Recall	0.9487	0.9522	0.9045
Balanced accuracy	0.9708	0.9737	0.9505
MCC	0.9486	0.9546	0.9174
PRC	0.9587	0.9643	0.9374