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. 2022 Feb 2;13:715637. doi: 10.3389/fmicb.2022.715637

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Copyright © 2022 Sikorski, Baumgartner, Birkhofer, Boeddinghaus, Bunk, Fischer, Fösel, Friedrich, Göker, Hölzel, Huang, Huber, Kandeler, Klaus, Kleinebecker, Marhan, von Mering, Oelmann, Prati, Regan, Richter-Heitmann, Rodrigues, Schmitt, Schöning, Schrumpf, Schurig, Solly, Wolters and Overmann.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Correspondence of modeled niches with carbon substrate utilization. NMDS ordination plot on Bray-Curtis distance (k = 3, stress = 0.08, the non-metric fit between ordination distance and observed dissimilarity based on stress was R² = 0.994) based on optimum niche values of the OTUs that corresponded to cultured isolates (type strains of validly named species and two Candidatus species). To enhance visualization, the NMDS scores from species and optimum niche values were separated into two panels (A,B), respectively. The colored background areas in both panels reflect adaptations of the cultured species (A) to high values of the indicated environmental variables (B) (see text). Ac.cap, Acidobacterium capsulatum; Ac.ail, Acidobacterium ailaaui; Te.ros, Terriglobus roseus; Te.alb, Terriglobus albidus; Te.saa, Terriglobus saanensis; Te.ten, Terriglobus tenax; Gr.pal, Granulicella paludicola; Gr.pec, Granulicella pectinivorans; Gr.ros, Granulicella rosea; Gr.agg, Granulicella aggregans; Gr.aci, Granulicella acidiphila; Gr.arc, Granulicella arctica; Gr.mal, Granulicella mallensis; Gr.tun, Granulicella tundricola; Gr.sap Granulicella, sapmiensis; Ed.mod, Edaphobacter modestus; Ed.agg, Edaphobacter aggregans; Ed.lic, Edaphobacter lichenicola; Ed.din, Edaphobacter dinghuensis; Ac.bor, Acidicapsa borealis; Ac.lig, Acidicapsa ligni; Ac.fer, Acidicapsa ferrireducens; Ac.acp, Acidicapsa acidiphila; Ac.ros, Acidipila rosea; Oc.rip, Occallatibacter riparius; Oc.sav, Occallatibacter savannae; Te.gab, Terracidiphilus gabretensis; Si.boh, Silvibacterium bohemicum; Pa.fer, Paludibaculum fermentans; Bl.fas, Blastocatella fastidiosa; Ar.fam, Aridibacter famidurans; Ar.kav, Aridibacter kavangonensis; Ar.nit, Aridibacter nitratireducens; Te.mul, Tellurimicrobium multivorans; St.ter, Stenotrophobacter terrae; St.ros, Stenotrophobacter roseus; St.nam, Stenotrophobacter namibiensis; Ar.lut, Arenimicrobium luteum; Py.met, Pyrinomonas methylaliphatogenes; Ch.the, Chloracidobacterium thermophilum; Vi.sil, Vicinamibacter silvestris; Lu.pra, Luteitalea pratensis; Ac.ped, Acanthopleuribacter pedis; Th.hyd, Thermotomaculum hydrothermale; Th.aqu, Thermoanaerobaculum aquaticum; Cand. Ko.ver, “Candidatus Koribacter versatilis”; Cand. So.usi, “Candidatus Solibacter usitatus.”