Table 3:
RNA-seq: alignment statistics to ARS-UI_Ramb_v2.0 and Oar_rambouillet_v1.0 from 5 different tissues
| Tissue | Genome* | No. input reads | Reads uniquely mapped | Reads multi-mapped | Reads unmapped | No. indels | |||
|---|---|---|---|---|---|---|---|---|---|
| No. | % | No. | % | No. | % | ||||
| Skin | v2.0 | 62,630,134 | 53,990,480 | 86.20 | 6,684,213 | 10.67 | 1,955,441 | 3.12 | 962 |
| v1.0 | 52,523,732 | 83.86 | 8,114,599 | 12.96 | 1,991,803 | 3.18 | 2,512 | ||
| Δ | N/A | 1,466,748 | 2.34 | −1,430,386 | −2.29 | −36,362 | −0.06 | −1,550 | |
| Thalamus | v2.0 | 54,655,873 | 45,721,452 | 83.65 | 5,414,620 | 9.91 | 3,519,801 | 6.44 | 649 |
| v1.0 | 44,904,096 | 82.16 | 6,126,363 | 11.21 | 3,625,414 | 6.63 | 1,054 | ||
| Δ | N/A | 817,356 | 1.49 | −711,743 | −1.30 | −105,613 | −0.19 | −405 | |
| Pituitary | v2.0 | 43,368,663 | 39,710,031 | 91.56 | 2,405,103 | 5.55 | 1,253,529 | 2.89 | 604 |
| v1.0 | 34,115,417 | 78.66 | 7,866,251 | 18.14 | 1,386,995 | 3.20 | 960 | ||
| Δ | N/A | 5,594,614 | 12.90 | −5,461,148 | −12.59 | −133,466 | -0.31 | −356 | |
| Lymph node— | v2.0 | 43,673,576 | 38,819,419 | 88.88 | 3,562,121 | 8.16 | 1,292,036 | 2.96 | 684 |
| mesenteric | v1.0 | 38,296,065 | 87.69 | 4,057,915 | 9.29 | 1,319,596 | 3.02 | 999 | |
| Δ | N/A | 523,354 | 1.19 | −495,794 | −1.13 | −27,560 | −0.06 | −315 | |
| Abomasum | v2.0 | 45,977,534 | 41,018,529 | 89.21 | 2,978,042 | 6.48 | 1,980,963 | 4.31 | 512 |
| pylorus | v1.0 | 40,403,981 | 87.88 | 3,533,015 | 7.68 | 2,040,538 | 4.44 | 846 | |
| Δ | N/A | 614,548 | 1.33 | −554,973 | −1.20 | −59,575 | −0.13 | −334 | |
*
Genomes include v2.0 (ARS-UI_Ramb_v2.0) and v1.0 (Oar_rambouillet_v1.0) and the difference (Δ).