TABLE 1.
The genome and assembly characteristics of clinical S. aureus strains collected in the present study
| Strain | Genome size (bp) | Contig no. | GC content | Genome coverage | Contig N50 (bp) | Longest contig (bp) | Shortest contig (bp) | CDSs | 5S rRNAs | 16S rRNAs | 23S rRNAs | tRNAs | ncRNAs | Accession no. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BJ12 | 2742597 | 49 | 32.60% | 444.0x | 130672 | 518539 | 971 | 2653 | 2 | 1 | 1 | 42 | 4 | JACSCT000000000 |
| BJ95 | 2752796 | 58 | 32.55% | 212.0x | 130512 | 269920 | 535 | 2684 | 2 | 1 | 1 | 56 | 4 | JAJNRL000000000 |
| HN288 | 2814465 | 70 | 32.62% | 443.0x | 91859 | 251546 | 679 | 2775 | 2 | 1 | 1 | 42 | 4 | JACSCV000000000 |
| NXNE | 3040523 | 361 | 32.50% | 410.0x | 31309 | 110219 | 769 | 3195 | 2 | 1 | 1 | 29 | 5 | JACSCU000000000 |
| NX98 | 2764714 | 47 | 32.61% | 112.0x | 128785 | 370569 | 542 | 2723 | 2 | 1 | 1 | 57 | 4 | JAJNRM000000000 |
| WH60 | 2756939 | 53 | 32.58% | 434.0x | 137934 | 459316 | 1143 | 2689 | 2 | 1 | 1 | 42 | 4 | JACSCK000000000 |
| WH99 | 2793342 | 43 | 32.61% | 388.0x | 141243 | 459061 | 769 | 2748 | 2 | 1 | 1 | 42 | 4 | JACSCL000000000 |
| WH114 | 2852635 | 60 | 32.70% | 402.0x | 129031 | 339786 | 934 | 2798 | 2 | 1 | 1 | 42 | 4 | JACSCM000000000 |
| WH119 | 2819585 | 56 | 32.59% | 415.0x | 120247 | 370596 | 769 | 2796 | 2 | 1 | 1 | 34 | 4 | JACSCN000000000 |
| WH211 | 2717727 | 421 | 32.67% | 413.0x | 10262 | 39903 | 239 | 2935 | 1 | 1 | 1 | 19 | 4 | JACSCO000000000 |
| WH299 | 2771230 | 56 | 32.63% | 409.0x | 128999 | 331897 | 290 | 2719 | 2 | 1 | 1 | 42 | 4 | JACSCP000000000 |
| WH17 | 2730179 | 28 | 32.82% | 427.0x | 178484 | 465206 | 1071 | 2668 | 3 | 1 | 2 | 43 | 4 | JACSCQ000000000 |
| WH31 | 2864942 | 60 | 32.68% | 441.0x | 89206 | 310920 | 1141 | 2829 | 2 | 1 | 1 | 34 | 4 | JACSCR000000000 |
| WH231 | 2659666 | 530 | 32.71% | 416.0x | 7660 | 31367 | 242 | 2907 | 2 | 1 | 2 | 37 | 4 | JACSCS000000000 |
| WH39 | 2882893 | 1 | 32.70% | 432.0x | 2828 | 6 | 5 | 5 | 60 | 4 | CP060491 | |||
| WH52 | 2842754 | 1 | 32.74% | 331.0x | 2760 | 6 | 5 | 5 | 58 | 4 | CP060584 |