REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
anti-ZO-1 antibody | Thermo Fisher Scientific | cat. # 33-9100; RRID:AB_2533147 |
goat anti-mouse IgG antibody, Alexa Fluor 488 | Thermo Fisher Scientific | cat. # A28175; RRID:AB_2536161 |
anti-Claudin-1 antibody | Thermo Fisher Scientific | cat. # 51-9000; RRID: AB_2533916 |
goat anti-rabbit IgG antibody, Alexa Fluor 555 | Thermo Fisher Scientific | cat. # A27039; RRID:AB_ 2536100 |
Chemicals, peptides, and recombinant proteins | ||
Blocking One | Nacalai Tesque | cat.# 03953 |
KSOM | Millipore | cat. # MR-106D |
Ouabain | Sigma-Aldrich | cat.# O3125 |
Alexa Fluor 546 Phalloidin | Thermo Fisher Scientific | cat.# A22283; RRID:AB_2632953 |
Hoechst 33342 | Thermo Fisher Scientific | cat.# H3570 |
Lipofectamine 2000 | Invitrogen | cat. # 11668-027 |
Effectene | Qiagen | cat. # 301425 |
Latrunculin B | Enzo Life Science | cat. # BML-T110-0001 |
Digitonin | WAKO | cat. # 048-02124 |
Trypsin | Nacalai Tesque | cat # 35555-54 |
(3-aminopropyl) triethoxysilane | Sigma-Aldrich | cat. # 440140 |
Sulfo-SANPAH | Pierce | cat. # 22589 |
1.6-hexanediol | WAKO | cat. # 087-00432 |
Experimental models: organisms/strains | ||
R26-ZO-1EGFP | RIKEN | accession # CDB026K |
wild type ICR mice | Japan CREA | N/A |
Experimental models: cell lines | ||
MDCK I cells | Fujiwara et al. (2016) | N/A |
A6 cells | Mimori-Kiyosue et al. (2007) | N/A |
Recombinant DNA | ||
human ZO-1 | Konno et al. (2008) | N/A |
GFP-ZO-1/pCS2 | This paper | N/A |
GFP-ZO-1ΔABD/pCS2 (Δ1151-1371) | This paper | N/A |
GFP-ZO-1ΔABD-ΔIDR123/pCS2 (Δ114-118, Δ275-415, Δ588-627, Δ1151-1371) | This paper | N/A |
GFP-ZO-1ΔIDR4/pCS2 (Δ858-1580) | This paper | N/A |
GFP-ZO-1-PSG/pCS2 (424-794) | This paper | N/A |
GFP-ZO-1ΔABDΔPSG/pCS2 (Δ424--794, Δ1151-1371) | This paper | N/A |
Lifeact-RFP | Iioka et al. (2007) | N/A |
RFP-MoesinABD | Iioka et al. (2004) | N/A |
mCherry-Utrophin | Kim and Davidson (2013) | N/A |
Software and algorithms | ||
Fiji | NIH | https://fiji.sc |
Python 3.9 | Python Core Team | https://www.python.org |
Pandas | ver. 1.2.4 | http://pandas.pydata.org |
Seaborn | ver. 0.11.1 | https://seaborn.pydata.org |
Matplotlib | ver. 3.4.2 | https://matplotlib.org |
scipy.stats | ver. 1.6.3 | https://docs.scipy.org/doc/scipy/reference/stats.html |
statsmodels.stats.multicomp | ver. 0.13.1 | https://www.statsmodels.org/dev/index.html |
Andor IQ2 | Oxford Instruments | https://andor.oxinst.com/products/iq-live-cell-imaging-software/ |
PrDOS (protein disorder prediction system) | Ishida and Kinoshita (2007) | http://prdos.hgc.jp/cgi-bin/top.cgi |