TABLE 3.
Model | d.f. | λ0 | λ1 | μ0 | μ1 | q 01 | q 10 | lnLik | AIC | ΔAIC |
q10 = 0 | 5 | 0.334 | 0.407 | 0.0003 | 0.005 | 0.045 | 0 | −234.333 | 476.664 | 0 |
μ1 = 0 | 5 | 0.333 | 0.404 | 0.0003 | 0 | 0.043 | 0.004 | −234.176 | 478.352 | 1.688 |
μ0 = μ1 | 5 | 0.333 | 0.404 | 0.0003 | 0.0003 | 0.043 | 0.004 | −234.247 | 478.494 | 1.83 |
μ0 = 0 | 5 | 0.332 | 0.408 | 0 | 0.007 | 0.041 | 0.007 | −234.446 | 478.892 | 2.228 |
λ0 = λ1 | 5 | 0.373 | 0.373 | 0.032 | 0.002 | 0.042 | 0.005 | −234.825 | 479.649 | 2.985 |
Full | 6 | 0.333 | 0.407 | 0.0005 | 0.005 | 0.043 | 0.005 | −234.305 | 480.608 | 3.944 |
q01 = q10 | 5 | 0.330 | 0.41 | 0.004 | 0.009 | 0.029 | 0.029 | −236.098 | 482.196 | 5.532 |
q01 = 0 | 5 | 0.314 | 0.419 | 0.0006 | 0.041 | 0 | 0.057 | −237.103 | 484.207 | 7.543 |
λ0 = 0 | 5 | 0 | 0.592 | 0.171 | 0.0001 | 3.908 | 3.49 | −265.279 | 540.559 | 63.895 |
λ1 = 0 | 5 | 0.512 | 0 | 0.0001 | 0.156 | 3.19 | 4.408 | −268.279 | 546.559 | 69.895 |
λ, speciation rates; μ, extinction rates; q, transition rates; d.f., degrees of freedom. The coding of photosynthetic pathways follows Coding Scheme 1 (S1): C3 and C3 – CAM intermediate are coded as “0”; strong CAM as “1.” Sorted from best-fit model from top to bottom (according to the lowest AIC value) with the best-fit and the full models highlighted in bold.