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. 2022 Feb 2;25(3):103858. doi: 10.1016/j.isci.2022.103858

Table 1.

Data summary of the five top ETV6 modulators

Gene symbol
AKIRIN1
COMMD9
DYRK4
JUNB
SRP72
shRNA TRCN0000134954 TRCN0000167758 TRCN0000197116 TRCN0000014943 TRCN0000151445
Genome-wide shRNA screen Pool 12 11 13 2 15
Normalized counts T14 2822 1196 5864 178 5250
T28 1563 1538 15,253 1131 14,583
T28 BlastS 41,303 16,880 56,508 9936 163,516
T42 1306 1835 14,864 656 17,490
T42 BlastS 24,629 27,894 37,829 12,352 199,618
∑BlastS-ØBlastS counts 63,063 41,401 64,221 20,500 331,062
T14 corrected ratio 22.35 34.61 10.95 115.39 63.06
Targeted sequencing validation KD efficiency (remaining expression) 38.73% 18.78% 26.84% 19.44% 48.82%
Number of overexpressed targets (≥1 SD) 15 10 16 11 10
Mean targets relative expression SD corrected 4.35 2.73 6.03 1.67 2.85
Ratio 2.10 1.93 3.21 1.99 2.55
Mean controls relative expression SD corrected −1.07 −1.13 −0.76 −1.04 −0.15
Ratio 0.78 0.71 0.77 0.76 0.93
Student’s t test p value Targets vs no targets 0.00133 0.00127 0.00106 0.00129 0.00434
Targets SHC vs shRNA (paired) 0.00669 0.01284 0.00281 0.02227 0.00564

T14, T28, and T42 represent the timepoints (days after transduction), KD, knockdown; SD, standard deviation.