Table 1.
Data summary of the five top ETV6 modulators
| Gene symbol |
AKIRIN1 |
COMMD9 |
DYRK4 |
JUNB |
SRP72 |
||
|---|---|---|---|---|---|---|---|
| shRNA | TRCN0000134954 | TRCN0000167758 | TRCN0000197116 | TRCN0000014943 | TRCN0000151445 | ||
| Genome-wide shRNA screen | Pool | 12 | 11 | 13 | 2 | 15 | |
| Normalized counts | T14 | 2822 | 1196 | 5864 | 178 | 5250 | |
| T28 | 1563 | 1538 | 15,253 | 1131 | 14,583 | ||
| T28 BlastS | 41,303 | 16,880 | 56,508 | 9936 | 163,516 | ||
| T42 | 1306 | 1835 | 14,864 | 656 | 17,490 | ||
| T42 BlastS | 24,629 | 27,894 | 37,829 | 12,352 | 199,618 | ||
| ∑BlastS-ØBlastS counts | 63,063 | 41,401 | 64,221 | 20,500 | 331,062 | ||
| T14 corrected ratio | 22.35 | 34.61 | 10.95 | 115.39 | 63.06 | ||
| Targeted sequencing validation | KD efficiency (remaining expression) | 38.73% | 18.78% | 26.84% | 19.44% | 48.82% | |
| Number of overexpressed targets (≥1 SD) | 15 | 10 | 16 | 11 | 10 | ||
| Mean targets relative expression | SD corrected | 4.35 | 2.73 | 6.03 | 1.67 | 2.85 | |
| Ratio | 2.10 | 1.93 | 3.21 | 1.99 | 2.55 | ||
| Mean controls relative expression | SD corrected | −1.07 | −1.13 | −0.76 | −1.04 | −0.15 | |
| Ratio | 0.78 | 0.71 | 0.77 | 0.76 | 0.93 | ||
| Student’s t test p value | Targets vs no targets | 0.00133 | 0.00127 | 0.00106 | 0.00129 | 0.00434 | |
| Targets SHC vs shRNA (paired) | 0.00669 | 0.01284 | 0.00281 | 0.02227 | 0.00564 | ||
T14, T28, and T42 represent the timepoints (days after transduction), KD, knockdown; SD, standard deviation.