Table 1.
Cytoband | Gene | Tissue | Z score | SE | P value | Froma |
---|---|---|---|---|---|---|
2p22.3 | NLRC4 | LIV | − 3.383 | 0.044 | 3.04E−06 | STARNET |
3q21.3 | TXNRD3 | VAF | 2.566 | 0.059 | 1.36E−06 | STARNET |
4p14 | FAM114A1 | VAF | 4.026 | 0.050 | 3.44E−09 | GTEx |
4p14 | FAM114A1 | BLD | 4.845 | 0.037 | 1.80E−06 | GTEx |
5p13.2 | EGFLAM | COR | 5.596 | 0.047 | 7.70E−10 | GTEx |
6q16.1 | UFL1 | MAM | − 5.246 | 0.038 | 1.62E−06 | STARNET |
6q16.1 | UFL1 | BLD | − 4.687 | 0.038 | 8.70E−05 | STARNET |
6q16.1 | UFL1 | BLD | − 4.955 | 0.042 | 3.96E−07 | GTEx |
6q21 | WASF1 | SF | 4.320 | 0.059 | 1.91E−06 | STARNET |
6q25.3 | EZR | LIV | − 3.187 | 0.025 | 3.53E−06 | STARNET |
9p21.3 | FOCAD | VAF | 8.348 | 0.068 | 1.44E−12 | GTEx |
9q34.3 | SDCCAG3 | SKLM | − 3.015 | 0.061 | 1.74E−06 | STARNET |
12p11.21 | TSPAN11 | VAF | 2.285 | 0.065 | 1.79E−07 | STARNET |
12p12.3 | MGP | SF | − 3.412 | 0.040 | 5.67E−07 | GTEx |
12q14.3 | CAND1 | VAF | − 2.355 | 0.030 | 1.19E−07 | GTEx |
16p11.2 | STX4 | COR | 3.347 | 0.056 | 2.59E−06 | GTEx |
16q22.1 | WWP2 | AOR | 4.491 | 0.029 | 5.67E−06 | STARNET |
16q22.1 | WWP2 | AOR | 6.570 | 0.031 | 1.19E−07 | GTEx |
16q24.3 | GAS8 | LIV | 0.189 | 0.041 | 8.32E−07 | GTEx |
19p13.11 | HOMER3 | SKLM | 4.647 | 0.030 | 3.52E−08 | GTEx |
19q13.32 | KPTN | LIV | − 3.076 | 0.076 | 2.17E−06 | STARNET |
20q13.33 | RGS19 | LIV | − 4.913 | 0.028 | 1.52E−06 | GTEx |
20q13.33 | RGS19 | VAF | − 4.545 | 0.030 | 4.63E− 07 | GTEx |
20q13.33 | RGS19 | SKLM | − 5.026 | 0.024 | 1.42E−06 | STARNET |
20q13.33 | RGS19 | SKLM | − 5.298 | 0.018 | 9.29E−07 | GTEx |
TWAS transcriptome-wide association study, STARNET the Stockholm-Tartu Atherosclerosis Reverse Network Engineering panel, GTEx the Genotype-Tissue Expression panel, AOR aorta, COR coronary artery, MAM mammary artery, BLD blood, LIV liver, SF subcutaneous fat, VAF visceral abdominal fat, SKLM skeletal muscle
aAssociation statistics from either STARNET- or GTEx-based models