Table 1.
Viruses detected in 40 fecal samples from wild chimpanzees in the Kanyawara and Ngogo communities of Kibale National Park, Uganda.
| Virus | Closest match (accession number1) | Family | Host (Country, Year) | Genome | Length (nt)2 | % Identity3 | Accession number4 | |
|---|---|---|---|---|---|---|---|---|
| 1 | chimpanzee adenovirus | chimpanzee adenovirus Y25 (YP_006272954) | Adenoviridae | Chimpanzee (−, 1969) | dsDNA | 2403 | 99.75 | MW876510 |
| 2 | chimpanzee bufavirus | human bufavirus (AOR39545) | Parvoviridae | Human (Tunisia, 2013) | ssDNA | 1500 | 81.40 | MT076200 |
| 3 | chimpanzee circovirus 1 | dromedary stool-associated circular ssDNA virus (AIY31253) | Circoviridae | Camel (United Arab Emirates, 2013) | ssDNA | 1134 | 60.65 | MW876514 |
| 4 | chimpanzee circovirus 2 | circovirus sp. (QBA83760) | Circoviridae | Pig (China, 2017) | ssDNA | 1179 | 46.31 | MW876515 |
| 5 | chimpanzee enterovirus | enterovirus B112 (AJA74399) | Picornaviridae | Chimpanzee (Gabon, 2009) | ssRNA | 6150 | 92.78 | MW876511 |
| 6 | chimpanzee picobirna-like virus | kumba picobirna-like virus (QAA77647) | Unclassified Picornavirales | Human (Cameroon, 2014) | RNA | 1188 | 93.43 | MT076202 |
| 7 | chimpanzee salivirus | salivirus FHB (YP_009067077) | Picornaviridae | Human (China, 2011) | ssRNA | 7125 | 98.27 | MW876512 |
| 8 | chisavirus (chimpanzee stool-associated RNA virus) | husavirus (AWU65954) | Unclassified Picornavirales | Human (Venezuela, 2015) | ssRNA | 8379 | 62.95 | MW876513 |
| 9 | eastern chimpanzee associated porprismacovirus 1 | macaca mulatta feces associated virus 4 (APG55823) | Smacoviridae | Rhesus macaque (USA, 2014) | ssDNA | 777 | 64.00 | MT076205 |
| 10 | eastern chimpanzee associated porprismacovirus 2 | porcine associated porprismacovirus (QBP37091) | Smacoviridae | Pig (Vietnam, 2013) | ssDNA | 735 | 71.97 | MT076206 |
| 11 | eastern chimpanzee associated porprismacovirus 3 | porcine associated porprismacovirus 8 (YP_009054991) | Smacoviridae | Pig (USA, 2011) | ssDNA | 786 | 55.91 | MT076207 |
| 12 | eastern chimpanzee associated porprismacovirus 4 | chimpanzee stool associated circular ssDNA virus (ADB24816) | Smacoviridae | Chimpanzee (Tanzania, 2004) | ssDNA | 816 | 99.26 | MT076208 |
| 13 | eastern chimpanzee associated porprismacovirus 6 | Macaca mulatta feces associated virus 7 (APG55812) | Smacoviridae | Rhesus macaque (USA, 2014) | ssDNA | 780 | 68.34 | MT076210 |
| 14 | eastern chimpanzee associated porprismacovirus 7 | chimpanzee associated porprismacovirus 2 (YP_009508863) | Smacoviridae | Chimpanzee (Tanzania, 2004) | ssDNA | 586 | 92.27 | MW876516 |
| 15 | eastern chimpanzee associated porprismacovirus 8 | chicken smacovirus mg4_964 (QIR82267) | Smacoviridae | Chicken (USA, 2017) | ssDNA | 786 | 77.27 | MW876517 |
| 16 | eastern chimpanzee associated porprismacovirus 9 | chicken smacovirus mg4_964 (QIR82267) | Smacoviridae | Chicken (USA, 2017) | ssDNA | 771 | 68.98 | MW876518 |
| 17 | unclassified chimpanzee ssDNA virus 1 | unidentified circular ssDNA virus (APG55818) | Unclassified | Macaque (USA, 2014) | ssDNA | 639 | 96.70 | MW876519 |
| 18 | unclassified chimpanzee ssDNA virus 2 | uncultured virus (AUM61717) | Unclassified | Wastewater (USA, 2015) | ssDNA | 1020 | 58.31 | MW876520 |
1.
Accession number of closest match in GenBank
2.
Length of the nucleotide sequence used to analyze phylogenetic relationships and viral load
3.
% amino acid similarity of the new virus to its closest match in GenBank
4.
GenBank accession number of viral sequence from this study