TABLE 3.
Identity matrix based on pairwise comparisons of sodAint fragments of CNS type strains
| Straina | % Identity with the following strainb:
|
||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | |
| 1. S. arlettae | 82.3 | 86.5 | 86.2 | 84.6 | 80.7 | 80.4 | 79.3 | 86.2 | 88.1 | 81.4 | 76.5 | 84.6 | 88.1 | 77.4 | 89.7 | 86.9 | 87.6 | 87.9 | 74.8 | 77.6 | 91.1 | 71.8 | 85.8 | 76.9 | 73.9 | 85.3 | 82.1 | 71.1 | 83.7 | 88.8 | 88.8 | 77.6 | 77.9 | 71.8 | 71.8 | 81.6 | 71.6 | 85.1 | 89.0 |
| 2. S. auricularis | 83.2 | 83.0 | 83.0 | 79.9 | 79.9 | 81.1 | 83.0 | 82.8 | 80.6 | 74.6 | 80.9 | 82.8 | 75.1 | 86.0 | 84.1 | 83.0 | 83.0 | 73.2 | 74.4 | 80.4 | 65.7 | 83.7 | 72.3 | 72.3 | 83.0 | 79.6 | 69.2 | 78.6 | 83.7 | 83.7 | 75.8 | 76.2 | 69.2 | 69.2 | 79.6 | 69.2 | 82.8 | 82.1 | |
| 3. S. capitis subsp. capitis | 99.8 | 93.7 | 79.0 | 79.0 | 84.8 | 84.1 | 84.8 | 79.3 | 78.8 | 89.3 | 85.3 | 78.3 | 85.1 | 87.2 | 86.9 | 86.5 | 79.3 | 77.9 | 85.1 | 72.5 | 84.4 | 74.4 | 75.1 | 90.2 | 81.4 | 74.4 | 87.2 | 86.2 | 86.2 | 81.1 | 81.8 | 73.0 | 73.2 | 83.9 | 74.8 | 89.5 | 85.3 | ||
| 4. S. capitis subsp. ureolyticus | 93.9 | 78.8 | 78.8 | 84.6 | 84.4 | 84.6 | 79.0 | 79.0 | 89.0 | 85.1 | 78.1 | 84.6 | 86.9 | 86.7 | 86.2 | 79.0 | 78.1 | 85.3 | 72.3 | 84.1 | 74.8 | 74.8 | 90.0 | 81.1 | 74.1 | 86.9 | 86.0 | 86.0 | 80.9 | 81.6 | 72.7 | 73.0 | 83.7 | 74.6 | 89.3 | 84.8 | |||
| 5. S. caprae | 76.5 | 76.5 | 83.0 | 83.0 | 83.0 | 77.9 | 79.7 | 88.1 | 86.0 | 77.2 | 82.5 | 89.7 | 86.5 | 86.0 | 77.2 | 79.7 | 85.5 | 71.1 | 84.6 | 75.5 | 76.9 | 90.4 | 79.0 | 72.5 | 87.4 | 87.2 | 87.2 | 80.0 | 80.9 | 71.3 | 71.6 | 81.4 | 73.0 | 89.7 | 84.8 | ||||
| 6. S. carnosus subsp. carnosus | 99.5 | 73.9 | 78.3 | 78.8 | 96.8 | 73.7 | 77.6 | 79.0 | 74.8 | 80.7 | 75.1 | 78.8 | 79.7 | 69.7 | 71.8 | 79.0 | 69.9 | 79.5 | 70.9 | 71.8 | 79.0 | 93.8 | 69.0 | 75.8 | 78.1 | 78.1 | 76.5 | 76.9 | 70.8 | 70.6 | 88.0 | 69.4 | 77.6 | 78.8 | |||||
| 7. S. carnosus subsp. utilis | 73.7 | 78.1 | 78.6 | 96.8 | 73.7 | 77.4 | 79.0 | 74.6 | 80.7 | 74.8 | 78.6 | 79.5 | 69.7 | 71.8 | 79.0 | 69.9 | 78.8 | 70.6 | 71.6 | 79.0 | 93.8 | 69.0 | 75.8 | 78.1 | 78.1 | 76.0 | 76.5 | 70.8 | 70.6 | 87.7 | 69.4 | 77.6 | 78.8 | ||||||
| 8. S. chromogenes | 80.0 | 79.3 | 74.4 | 77.9 | 80.4 | 80.0 | 75.1 | 82.8 | 80.4 | 80.4 | 80.2 | 77.6 | 78.6 | 78.3 | 69.5 | 80.4 | 77.2 | 76.2 | 83.7 | 77.9 | 70.2 | 78.6 | 81.6 | 81.6 | 78.8 | 79.3 | 70.9 | 70.9 | 80.0 | 70.6 | 81.6 | 80.9 | |||||||
| 9. S. cohnii subsp. cohnii | 95.6 | 80.2 | 78.3 | 85.5 | 88.3 | 75.1 | 90.2 | 85.3 | 87.9 | 88.3 | 76.7 | 77.2 | 86.2 | 70.2 | 85.3 | 75.5 | 74.4 | 85.3 | 80.9 | 72.7 | 82.3 | 90.4 | 90.4 | 79.0 | 79.0 | 73.4 | 73.4 | 80.4 | 73.2 | 85.1 | 89.5 | ||||||||
| 10. S. cohnii subsp. urealyticum | 80.2 | 78.8 | 85.1 | 90.4 | 75.1 | 91.6 | 86.5 | 87.9 | 88.3 | 76.5 | 78.1 | 87.6 | 70.9 | 86.7 | 76.5 | 74.1 | 87.6 | 80.2 | 71.8 | 83.7 | 91.8 | 91.8 | 77.6 | 77.6 | 72.7 | 72.7 | 80.0 | 72.3 | 86.7 | 90.0 | |||||||||
| 11. S. condimenti | 74.8 | 78.8 | 79.3 | 75.3 | 81.8 | 76.2 | 80.0 | 80.9 | 69.7 | 72.3 | 79.3 | 69.9 | 79.3 | 71.3 | 72.0 | 79.3 | 94.7 | 69.7 | 75.1 | 78.6 | 78.6 | 75.5 | 76.0 | 71.5 | 71.3 | 89.1 | 70.1 | 78.6 | 79.5 | ||||||||||
| 12. S. delphini | 77.4 | 78.6 | 75.1 | 78.1 | 78.3 | 78.1 | 78.3 | 75.8 | 91.8 | 79.5 | 69.7 | 78.1 | 81.8 | 73.0 | 80.4 | 75.1 | 70.2 | 75.5 | 80.9 | 80.9 | 80.9 | 80.9 | 69.5 | 69.5 | 76.7 | 70.2 | 79.3 | 78.3 | |||||||||||
| 13. S. epidermidis | 83.4 | 79.5 | 84.1 | 84.6 | 87.9 | 88.1 | 76.2 | 78.1 | 84.1 | 69.5 | 82.8 | 74.4 | 75.8 | 86.5 | 79.0 | 72.5 | 88.6 | 83.7 | 83.7 | 80.0 | 79.7 | 73.7 | 73.7 | 80.2 | 73.0 | 85.8 | 84.1 | ||||||||||||
| 14. S. equorum | 75.5 | 89.3 | 86.9 | 85.8 | 85.8 | 74.1 | 76.9 | 89.7 | 70.2 | 85.1 | 73.2 | 73.9 | 86.0 | 81.1 | 70.6 | 83.9 | 93.0 | 93.0 | 76.9 | 77.2 | 70.6 | 70.6 | 83.0 | 71.1 | 85.8 | 91.4 | |||||||||||||
| 15. S. felis | 75.1 | 76.9 | 76.5 | 76.5 | 76.7 | 74.4 | 79.7 | 69.9 | 79.0 | 75.1 | 76.5 | 76.9 | 74.1 | 71.8 | 75.1 | 76.9 | 76.9 | 76.7 | 76.7 | 72.3 | 71.8 | 73.4 | 72.3 | 76.5 | 76.7 | ||||||||||||||
| 16. S. gallinarum | 86.7 | 88.1 | 88.6 | 74.8 | 79.5 | 90.0 | 71.3 | 87.2 | 75.8 | 74.6 | 87.4 | 83.7 | 72.5 | 82.8 | 91.8 | 91.8 | 77.4 | 76.9 | 72.3 | 72.3 | 81.6 | 73.0 | 86.0 | 91.4 | |||||||||||||||
| 17. S. haemolyticus | 87.6 | 87.9 | 74.6 | 78.1 | 86.0 | 69.0 | 87.6 | 73.9 | 78.1 | 86.7 | 78.8 | 70.2 | 83.7 | 88.6 | 88.6 | 78.6 | 78.8 | 70.4 | 70.6 | 77.4 | 70.2 | 86.0 | 86.9 | ||||||||||||||||
| 18. S. hominis subsp. hominis | 99.3 | 75.8 | 79.0 | 86.7 | 70.9 | 87.4 | 75.5 | 79.0 | 86.0 | 81.4 | 73.4 | 83.7 | 85.5 | 85.5 | 80.0 | 80.0 | 73.2 | 73.0 | 81.1 | 73.4 | 85.5 | 86.7 | |||||||||||||||||
| 19. S. hominis subsp. novobiosepticus | 75.5 | 79.0 | 86.2 | 71.1 | 87.6 | 75.5 | 78.8 | 85.5 | 82.3 | 73.4 | 83.4 | 86.0 | 86.0 | 79.5 | 79.5 | 73.2 | 73.0 | 81.1 | 73.4 | 85.5 | 86.7 | ||||||||||||||||||
| 20. S. hyicus | 75.3 | 73.9 | 66.4 | 73.9 | 73.7 | 70.4 | 76.7 | 69.5 | 68.1 | 75.3 | 74.8 | 74.8 | 74.8 | 74.8 | 68.8 | 69.0 | 71.1 | 68.5 | 76.0 | 74.4 | |||||||||||||||||||
| 21. S. intermedius | 80.2 | 68.3 | 79.5 | 81.1 | 74.1 | 79.5 | 72.5 | 68.5 | 76.9 | 80.4 | 80.4 | 77.4 | 77.9 | 67.4 | 67.4 | 74.8 | 68.5 | 79.3 | 78.3 | ||||||||||||||||||||
| 22. S. kloosii | 72.0 | 87.6 | 76.9 | 75.1 | 87.4 | 80.0 | 73.4 | 84.8 | 90.9 | 90.9 | 78.1 | 77.9 | 73.0 | 73.0 | 81.6 | 73.9 | 85.3 | 90.9 | |||||||||||||||||||||
| 23. S. lentus | 69.7 | 68.3 | 69.5 | 73.9 | 68.5 | 90.0 | 66.9 | 72.0 | 72.0 | 66.9 | 67.6 | 88.9 | 88.7 | 69.0 | 90.0 | 73.4 | 70.6 | ||||||||||||||||||||||
| 24. S. lugdunensis | 76.5 | 74.8 | 84.4 | 79.5 | 70.4 | 82.3 | 86.9 | 86.9 | 78.6 | 79.0 | 70.2 | 69.9 | 77.6 | 70.9 | 84.4 | 84.6 | |||||||||||||||||||||||
| 25. S. lutrae | 71.3 | 75.8 | 72.0 | 69.7 | 73.7 | 74.4 | 74.4 | 77.9 | 78.1 | 68.1 | 68.1 | 70.6 | 69.7 | 72.7 | 74.6 | ||||||||||||||||||||||||
| 26. S. muscae | 76.0 | 71.3 | 70.4 | 74.4 | 74.4 | 74.4 | 74.6 | 74.4 | 71.6 | 71.1 | 72.3 | 70.9 | 74.4 | 74.4 | |||||||||||||||||||||||||
| 27. S. pasteuri | 80.7 | 73.7 | 86.2 | 88.1 | 88.1 | 81.6 | 82.1 | 75.5 | 75.8 | 83.7 | 74.1 | 94.4 | 86.5 | ||||||||||||||||||||||||||
| 28. S. piscifermentans | 70.4 | 75.8 | 80.2 | 80.2 | 78.1 | 78.1 | 70.8 | 70.6 | 90.7 | 70.8 | 79.5 | 80.0 | |||||||||||||||||||||||||||
| 29. S. pulvereri | 69.9 | 73.2 | 73.2 | 69.5 | 69.9 | 93.5 | 93.3 | 68.3 | 99.5 | 74.1 | 73.0 | ||||||||||||||||||||||||||||
| 30. S. saccharolyticus | 85.1 | 85.1 | 81.1 | 80.9 | 71.6 | 71.8 | 78.1 | 70.4 | 84.4 | 84.8 | |||||||||||||||||||||||||||||
| 31. S. saprophyticus subsp. bovis | 100.0 | 79.0 | 79.0 | 72.7 | 72.7 | 80.7 | 73.7 | 87.6 | 94.4 | ||||||||||||||||||||||||||||||
| 32. S. saprophyticus subsp. saprophyticus | 79.0 | 79.0 | 72.7 | 72.7 | 80.7 | 73.7 | 87.6 | 94.4 | |||||||||||||||||||||||||||||||
| 33. S. schleiferi subsp. coagulans | 98.8 | 69.5 | 69.7 | 78.3 | 69.9 | 79.7 | 78.6 | ||||||||||||||||||||||||||||||||
| 34. S. schleiferi subsp. schleiferi | 69.0 | 69.2 | 79.0 | 70.4 | 80.4 | 78.6 | |||||||||||||||||||||||||||||||||
| 35. S. sciuri subsp. carnaticus | 99.3 | 69.0 | 93.5 | 74.4 | 72.0 | ||||||||||||||||||||||||||||||||||
| 36. S. sciuri subsp. sciuri | 69.0 | 93.3 | 74.4 | 72.0 | |||||||||||||||||||||||||||||||||||
| 37. S. simulans | 68.8 | 82.5 | 81.1 | ||||||||||||||||||||||||||||||||||||
| 38. S. vitulus | 74.6 | 73.4 | |||||||||||||||||||||||||||||||||||||
| 39. S. warneri | 84.4 | ||||||||||||||||||||||||||||||||||||||
| 40. S. xylosus | |||||||||||||||||||||||||||||||||||||||
a
The main characteristics of the strains are listed in Table 1.
b
The strain numbers correspond to the strains identified by the numbers on the left.