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. 2022 Feb 17;12:2659. doi: 10.1038/s41598-022-06625-6

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Snapshots of the intermediate steps. (A) A summary plot showing the overall process from the sampling to lineagespot. (B) A VCF file produced by the chosen variant caller (C) SARS-CoV-2 characteristic substitutions retrieved either from a public source (such as Pangolin or outbreak.info), or be user-provided. (D). A tab-delimited file as produced by lineagespot.