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Summary table of the three output files produced by freebayes, mpileup and GATK mutect2 variant caller.
| Variant calling comparison | Number of differences | Max absolute Nt difference |
|---|---|---|
| freebayes–gatk | 3791 | 31 |
| freebayes–mpileup | 3140 | 33 |
| gatk–mpileup | 1571 | 31 |
The three variant callers are compared in pairs.
