TABLE 3.

Performance comparison of LncPNet and eight available methods.

Method	PRE	REC	SPE	ACC	MCC	F1	AUC
CF	0.583	0.894	0.361	0.627	0.301	0.706	0.761
RWR	0.739	0.798	0.717	0.757	0.517	0.767	0.830
LPBNI	0.740	0.840	0.698	0.769	0.548	0.785	0.859
SFPEL-LPI	0.769	0.920	0.724	0.822	0.657	0.838	0.916
LPIHN	0.807	0.966	0.769	0.867	0.750	0.879	0.938
LPLNP	0.832	0.943	0.810	0.876	0.761	0.884	0.944
RPI-SE	0.877	0.974	0.863	0.919	0.843	0.923	0.959
IPMiner	0.886	0.970	0.875	0.922	0.849	0.926	0.961
LncPNet	0.908	0.957	0.903	0.930	0.860	0.932	0.971

Every bold value means it corresponds to the highest value in the evaluation indicator.