Table 2.
Haplotypes A-K.
| Haplotype | SNVs | Patient | Isolate |
|---|---|---|---|
| A | 5′UTR: ntC241T, ORF1ab: F924F, ORF1ab: P4715L, ORF1ab: S5398P, S: D614G, M: F53F | (*) | (*) |
| B | ORF3a: D222A | #7 | 13 |
| C | S: L5F | #6 | 18 |
| D | M: E11E | #10 | 2 |
| E | ORF1ab: T2648N | #4 | 26 |
| F | 5’UTR: ntT241C, ORF1ab: P5398S, S: G614D | #26 | 39 |
| G | ORF1ab: L5022F, ORF3a: ntG26155-, ntG26156-, ntG26157- | #34 | 48 |
| H | ORF1ab: A964A | #38 | 56 |
| I | ORF1ab: L3606F, ORF1ab: P3613L | #39 | 5 |
| J | N: T265I | #41 | 59 |
| K | M: M84I | #46 | 64 |
(*) The complete list of patients/isolates with the Hap A is reported in Supplementary File S1 and S5.