Table 3.
COG functional categories of L. paracasei strain.
| COG class | Description | GMNL-653 | GMNL-855 | BCRC 16100 |
|---|---|---|---|---|
| J | Translation, ribosomal structure, and biogenesis | 107 (4.1%) | 157 (5.9%) | 149 (6.2%) |
| L | Replication, recombination, and repair | 304 (11.6%) | 258 (9.7%) | 135 (5.7%) |
| K | Transcription | 209 (8.0%) | 212 (8.0%) | 201 (8.4%) |
| D | Cell cycle control, cell division, chromosome partitioning | 29 (1.1%) | 28 (1.1%) | 25 (1.0%) |
| V | Defense mechanisms | 104 (4.0%) | 103 (3.9%) | 81 (3.4%) |
| T | Signal transduction mechanisms | 60 (2.3%) | 62 (2.3%) | 64 (2.7%) |
| M | Cell wall/membrane/envelope biogenesis | 129 (4.9%) | 136 (5.1%) | 138 (5.8%) |
| N | Cell motility | 2 (0.1%) | 1 (0.1%) | 1 (0.1%) |
| U | Intracellular trafficking, secretion, and vesicular transport | 20 (0.8%) | 24 (0.9%) | 16 (0.7%) |
| O | Post-translational modification, protein turnover, and chaperones | 71 (2.7%) | 65 (2.4%) | 61 (2.6%) |
| C | Energy production and conversion | 107 (4.1%) | 113 (4.2%) | 110 (4.6%) |
| G | Carbohydrate transport and metabolism | 270 (10.3%) | 314 (11.8%) | 307 (12.9%) |
| E | Amino acid transport and metabolism | 207 (7.9%) | 203 (7.6%) | 196 (8.2%) |
| F | Nucleotide transport and metabolism | 88 (3.3%) | 88 (3.3%) | 87 (3.6%) |
| H | Coenzyme transport and metabolism | 47 (1.8%) | 46 (1.7%) | 47 (2.0%) |
| I | Lipid transport and metabolism | 55 (2.1%) | 54 (2.0%) | 52 (2.2%) |
| P | Inorganic ion transport and metabolism | 113 (4.3%) | 113 (4.2%) | 114 (4.8%) |
| Q | Secondary metabolites biosynthesis, transport, and catabolism | 18 (0.7%) | 13 (0.5%) | 16 (0.7%) |
| S | Function unknown | 687 (26.2%) | 676 (25.4%) | 587 (24.6%) |