Appendix 1—table 3. Hi-C libraries generated in this study.

Library name	Relevant genotype and stage	Total R1/R2 aligned reads (M)	Valid unique Hi-C pairs (M)
HiC1_28719_wt	RPL13A-2xFKBP12 fpr1∆ tor1-1 ndt80∆ prophase	97,377,167/93,678,652	17,763,563
HiC1_28720_eco1-aa	RPL13A-2xFKBP12 fpr1∆ tor1-1 ndt80∆ ECO1-FRB-GFP prophase	103,777,687/100,044,807	15,759,219
HiC1_29750_wpl1	RPL13A-2xFKBP12 fpr1∆ tor1-1 ndt80∆ rad61∆ prophase	77,203,756/74,233,462	13,525,545
HiC1_29781_eco1-aa_wpl1	RPL13A-2xFKBP12 fpr1∆ tor1-1 ndt80∆ ECO1-FRB-GFP rad61∆ prophase	95,353,060/92,175,659	11,292,250
HiC2_11633_wt	ndt80∆ prophase	175,716,902/172,151,440	18,256,545
HiC2_28841_clb5_clb6	ndt80∆ clb5Δ clb6Δ prophase	160,012,048/156,826,193	20,128,179
HiC3_28719_wt	RPL13A-2xFKBP12 fpr1∆ tor1-1 ndt80∆ prophase	105,178,126/103,054,489	13,127,333
HiC3_28720_eco1-aa	RPL13A-2xFKBP12 fpr1∆ tor1-1 ndt80∆ ECO1-FRB-GFP prophase	141,270,515/138,743,876	18,613,322
HiC3_31003_cdc6	RPL13A-2xFKBP12 fpr1∆ tor1-1 ndt80∆ cdc6-md prophase	108,810,021/106,207,643	16,583,830
HiC3_20991_eco1-aa	RPL13A-2xFKBP12 fpr1∆ tor1-1 ndt80∆ ECO1-FRB-GFP cdc6-md prophase	101,646,217/99,245,960	15,733,530
HiC4_12145_wt	pCUP1::IME1 pCUP1::IME4meiotic G1	201,424,826/198,072,796	24,576,849
HiC4_26946_clb5clb6	pCUP1::IME1 pCUP1::IME4 clb5Δ clb6Δ meiotic G1	240,834,552/235,969,577	27,737,075