REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Bacterial and virus strains | ||
AAV5-mDlx-ChR2-mCherry | Plasmid gift from Dr. Gord Fishell, Virus custom prepared by Addgene | N/A |
AAV1-CamKIIα-stGtACR2-FusionRed | Mahn et al, Nat Commun. 2018 | RRID:Addgene_105669 |
AAV5-Syn-DIO-PSAM4-GlyR-IRES-GFP | Magnus et al, Science, 2019 | RRID:Addgene_119741 |
Chemicals, peptides, and recombinant proteins | ||
μPSEM792 hydrochloride | Tocris | Cat#6865 |
C&B Metabond | Parkell | Cat#S380 |
Experimental models: Organisms/strains | ||
Mouse: B6.Tg(Grik4-cre)G32-4Stl/J | Jackson Laboratories | RRID: IMSR_JAX: 006474 |
Software and algorithms | ||
KiloSort (template based spike sorting MATLAB software) | Pachitariu M & Cortex-lab | https://github.com/cortex-lab/KiloSort |
KilosortWrapper | Peter C. Petersen & Brendon Watson | https://github.com/petersenpeter/KilosortWrapper |
Phy (Python GUI for manual spike curation) | Cyrille Rossant, Ken Harris et al. | https://github.com/cortex-lab/phy |
Phy plugins | Peter C. Petersen | https://github.com/petersenpeter/phy-plugins |
CellExplorer (Cell classification pipeline and graphical interface) | Peter C. Petersen & Gyorgy Buzsaki |
http://cellexplorer.org / DOI: https://doi.org/10.1016/j.neuron.2021.09.002. |
MATLAB | MathWorks | https://www.mathworks.com/ |
Buzcode (MATLAB analysis tools) | Buzsaki Lab |
https://github.com/buzsakilab/buzcode (DOI: 10.5281/zenodo.5668715) |
Custom MATLAB scripts | Ipshita Zutshi | https://github.com/IpshitaZutshi/Zutshi_Neuron2021 (DOI: 10.5281/zenodo.5668669). |
FMA Toolbox (MATLAB toolbox for Freely Moving Animal (FMA)) | Michael Zugaro | https://fmatoolbox.sourceforge.net/ |
Chronux toolbox | Mitra lab | http://chronux.org/ |
Other | ||
Silicon probes | Neuronexus, Cambridge Neurotech, Diagnostic Biochips | A5x12-16-Buz-Lin, H2, H3, P128-2 |
RHD2000 USB Interface Board | Intan Technologies | C3100 |
64 channel digital amplifies | Intan Technologies | C3314 |
PulsePal v2 | Sanworks | N/A |
3D printed microdrives | Mihály Vöröslakos & Gyorgy Buzsaki | Voroslakos et al, 2021 |