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. Author manuscript; available in PMC: 2023 Feb 16.
Published in final edited form as: Neuron. 2021 Dec 9;110(4):658–673.e5. doi: 10.1016/j.neuron.2021.11.015

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and virus strains
AAV5-mDlx-ChR2-mCherry Plasmid gift from Dr. Gord Fishell, Virus custom prepared by Addgene N/A
AAV1-CamKIIα-stGtACR2-FusionRed Mahn et al, Nat Commun. 2018 RRID:Addgene_105669
AAV5-Syn-DIO-PSAM4-GlyR-IRES-GFP Magnus et al, Science, 2019 RRID:Addgene_119741
Chemicals, peptides, and recombinant proteins
μPSEM792 hydrochloride Tocris Cat#6865
C&B Metabond Parkell Cat#S380
Experimental models: Organisms/strains
Mouse: B6.Tg(Grik4-cre)G32-4Stl/J Jackson Laboratories RRID: IMSR_JAX: 006474
Software and algorithms
KiloSort (template based spike sorting MATLAB software) Pachitariu M & Cortex-lab https://github.com/cortex-lab/KiloSort
KilosortWrapper Peter C. Petersen & Brendon Watson https://github.com/petersenpeter/KilosortWrapper
Phy (Python GUI for manual spike curation) Cyrille Rossant, Ken Harris et al. https://github.com/cortex-lab/phy
Phy plugins Peter C. Petersen https://github.com/petersenpeter/phy-plugins
CellExplorer (Cell classification pipeline and graphical interface) Peter C. Petersen & Gyorgy Buzsaki http://cellexplorer.org
/ DOI: https://doi.org/10.1016/j.neuron.2021.09.002.
MATLAB MathWorks https://www.mathworks.com/
Buzcode (MATLAB analysis tools) Buzsaki Lab https://github.com/buzsakilab/buzcode
(DOI: 10.5281/zenodo.5668715)
Custom MATLAB scripts Ipshita Zutshi https://github.com/IpshitaZutshi/Zutshi_Neuron2021 (DOI: 10.5281/zenodo.5668669).
FMA Toolbox (MATLAB toolbox for Freely Moving Animal (FMA)) Michael Zugaro https://fmatoolbox.sourceforge.net/
Chronux toolbox Mitra lab http://chronux.org/
Other
Silicon probes Neuronexus, Cambridge Neurotech, Diagnostic Biochips A5x12-16-Buz-Lin, H2, H3, P128-2
RHD2000 USB Interface Board Intan Technologies C3100
64 channel digital amplifies Intan Technologies C3314
PulsePal v2 Sanworks N/A
3D printed microdrives Mihály Vöröslakos & Gyorgy Buzsaki Voroslakos et al, 2021