REAGENT or RESOURCE	SOURCE	IDENTIFIER
Antibodies
CK19	Developmental Studies Hybridoma Bank (DSHB)	Cat.no.TROMAIII
CEACAM1	LSBio	Cat.no. LS-C106710
GS (Glutamine synthetase)	Sigma-Aldrich	Cat.no.G2781
Chemicals, peptides, and recombinant proteins
Sodium phosphate monobasic monohydrate	Sigma-Aldrich	Cat.no. S9638
Sodium phosphate dibasic (anhydrous)	Sigma-Aldrich	Cat.no. S9763
Sodium azide	Sigma-Aldrich	Cat.no. S2002
16% w/v Paraformaldehyde	Fisher Scientific	Cat.no. 50-980-487
2% bio-acrylamide	Bio-Rad	Cat.no. 161-0142
40% acrylamide	Bio-Rad	Cat.no. 161-0140
VA-044	Wako Chemicals, Fisher	Cat.no. NC0632395
X-CLARITYTM Electrophoretic Tissue Clearing Solution	Logos Bio	Cat.no. C13001
N,N,N′,N′ Tetrakis(2-Hydroxypropyl)ethylenediamine (Quadrol)	Sigma-Aldrich	Cat.no. 122262
Boric acid	Fisher Scientific	Cat.no. A74-500
Sodium sulfite	Sigma-Aldrich	Cat.no. S0505
Bovine serum albumin (BSA)	Fisher Scientific	Cat.no. BP1605-100
Sodium dodecyl sulfate (SDS)	Sigma-Aldrich	Cat.no. L3771
Triton X-100	Fisher Scientific	Cat.no. BP151-500
Urea	Sigma-Aldrich	Cat.no. U5378
Sucrose	Sigma-Aldrich	Cat.no. S9378
Ammonium hydroxide 25%	Sigma-Aldrich	Cat.no. 105432
30% Hydrogen peroxide	Fisher Scientific	Cat.no. H325-500
Experimental models: Organisms/strains
Wild type mice, C57BL6	The Jackson Laboratory	N/A
Mouse: Foxa3-Cre YAP1 KO [Tg(Foxa3-Cre)1Khk, Yap1tm1.1Dupa, Gt(ROSA)26Sortm1(EYFP)Cos/J]	Molina et al., (2021)	N/A
Software and algorithms
Imaris 9.7.2	Bitplane	N/A
Alternative image process and analysis software
Other
50 mL Falcon conical tubes	Fisher Scientific	Cat.no. 05-539-9
X-Clarity clearing system (this study)	LogosBio	Cat.no. XC-ETC 2
Alternative clearing systems	See other resources section	N/A
Sample holder for X-Clarity clearing system (3D printed)	See other resources section	N/A
Ribbon Scanning Confocal (this study)	Caliber I.D.	Cat.no. RS-G4
Alternative cleared tissue microscopy imaging platform