Table 1.
Statistics of Genome Assembly and Annotation of Pavo muticus
| Item | Category | Number |
|---|---|---|
| Sequencing data | PacBio (Gb) | 159.45 |
| Genome survey (Gb) | 139.52 | |
| Hi-C (Gb) | 692.45 | |
| RNA-seq (Gb) | 35.60 | |
| Assembly (PacBio) | Estimated genome size (Gb) | 1.05 |
| Assembled genome size (Gb) | 1.049 | |
| Contig number | 2324 | |
| Contig N50 (Mb) | 25.4 | |
| Longest scaffold (Mb) | 113.2 | |
| Assembly (Hi-C) | Assembled genome size (Gb) | 1.049 |
| Scaffold number | 115 | |
| Scaffold N50 (Mb) | 75.5 | |
| Longest scaffold (Mb) | 151.5 | |
| Annotation | GC content (%) | 42.1 |
| Repeat sequences (%) | 14.1 | |
| Number of protein-coding genes | 14,935 | |
| Number of functionally annotated genes | 14,931 | |
| Average gene length (kb) | 20.1 | |
| Average exon length (bp) | 171.9 | |
| Average intron length (kb) | 2.1 | |
| Average exon per gene | 9.8 |