Table 2.

Mean results across tenfold cross-validation of prediction for each investigated species with the 3 different input data type: adjacency matrices only, adjacency matrices concatenated with embedding vector-based matrices, embedding vector-based matrices only

Species	Adjacency only			Combined			Embedding only
	AUROC	AUPRC	NDCG	AUROC	AUPRC	NDCG	AUROC	AUPRC	NDCG
Homo sapiens	0.913	0.169	0.761	0.915	0.179	0.767	0.761	0.022	0.606
Saccharomyces cerevisiae	0.931	0.202	0.781	0.930	0.210	0.787	0.789	0.034	0.635
Mus musculus	0.909	0.137	0.742	0.904	0.135	0.739	0.739	0.020	0.599
Rattus norvegicus	0.925	0.252	0.809	0.923	0.258	0.812	0.750	0.027	0.633
Sus scrofa	0.898	0.120	0.721	0.895	0.126	0.729	0.745	0.017	0.583
Mean	0.915	0.176	0.763	0.913	0.182	0.767	0.757	0.024	0.612

AUROC: area under the receiver operating characteristic curve; AUPRC: area under the precision-recall curve; NDCG: normalized discounted cumulative gain; Combined: adjacency matrices concatenated with embedding vector-based matrices as input