TABLE 4.
A summary of significant SNPs consistently associated with gummosis disease in peach accessions.
Model | SNP ID | Chromosome | Position | P-value | MAF | FDR | Allelic effect | Variance explained |
FarmCPU | rs22118 | 1 | 13,801,843 | 9.95E-10 | 0.061538 | 7.24E-05 | 1.113248981 | 19.85 |
FarmCPU | rs191998 | 4 | 12,480,256 | 5.46E-08 | 0.092308 | 0.002648813 | -0.732419028 | 19.03 |
FarmCPU | rs285957 | 6 | 28,139,324 | 9.15E-11 | 0.294872 | 1.33E-05 | 0.640842547 | 6.28 |
BLINK | rs96598 | 2 | 13,388,877 | 7.73E-09 | 0.464103 | 0.000375161 | NA | 6.98 |
BLINK | rs142398 | 3 | 9,810,975 | 3.20E-09 | 0.089744 | 0.000233144 | NA | 17.94 |
BLINK | rs285957 | 6 | 28,139,324 | 8.27E-11 | 0.294872 | 1.20E-05 | NA | 17.41 |
FDR in the head row refers to “FDR. Adjusted P-values.”