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. 2022 Feb 7;12:786233. doi: 10.3389/fmicb.2021.786233

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Copyright © 2022 Colson, Fournier, Chaudet, Delerce, Giraud-Gatineau, Houhamdi, Andrieu, Brechard, Bedotto, Prudent, Gazin, Beye, Burel, Dudouet, Tissot-Dupont, Gautret, Lagier, Million, Brouqui, Parola, Fenollar, Drancourt, La Scola, Levasseur and Raoult.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Phylogenetic tree of 10,773 genomic sequences of SARS-CoV-2 obtained from patients SARS-CoV-2-diagnosed at IHU Méditerranée Infection, Marseille, France. Phylogeny reconstruction was performed using the nextstrain/ncov tool (https://github.com/nextstrain/ncov) then visualized with Auspice (https://docs.nextstrain.org/projects/auspice/en/stable/). The genome of the original Wuhan-Hu-1 coronavirus isolate (GenBank accession no. NC_045512.2) was added as outgroup. Major (most prevalent) variants are labeled. Marseille variants or WHO clades, and Pangolin, or Nextstrain clades are indicated. X-axis shows the number of mutations compared to the genome of the Wuhan-Hu-1 isolate (GenBank accession no. NC_045512.2).