TABLE 2.
Sequence statistic | pSa42-TC4 reads | pSa42-TC4 reads (>50 kb) | pSa42-TC5 reads | pSa42-TC5 reads (>50 kb) |
No. of sequences | 15,483 | 376 | 19,488 | 433 |
Sequence length (bp) | 112,500,802 | 29,167,802 | 132,510,505 | 33,297,717 |
Sequence N base (bp) | 0 | 0 | 0 | 0 |
Average length (bp) | 17,487 | 77,573.94 | 6,799.59 | 76,900.04 |
N50 length (bp) | 12,140 | 97,133 | 14,750 | 88,039 |
N90 length (bp) | 7,985 | 80,484 | 3,532 | 55,673 |
Maximum length (bp) | 159,040 | 159,040 | 150,465 | 150,465 |
Minimum length (bp) | 500 | 50,140 | 500 | 50,048 |
(G + C)/(G + C + A + T) (%) | 49.88 | 49.85 | 49.93 | 50.11 |
Reads (>50 kb) were extracted for further analysis of ISEcp1 activities and IS15DI target sites.