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. 2022 Feb 7;12:796715. doi: 10.3389/fmicb.2021.796715

TABLE 2.

Statistical summary of MinION Nanopore long reads generated from plasmid samples of strains Sa42-TC4 and Sa42-TC5.

Sequence statistic pSa42-TC4 reads pSa42-TC4 reads (>50 kb) pSa42-TC5 reads pSa42-TC5 reads (>50 kb)
No. of sequences 15,483 376 19,488 433
Sequence length (bp) 112,500,802 29,167,802 132,510,505 33,297,717
Sequence N base (bp) 0 0 0 0
Average length (bp) 17,487 77,573.94 6,799.59 76,900.04
N50 length (bp) 12,140 97,133 14,750 88,039
N90 length (bp) 7,985 80,484 3,532 55,673
Maximum length (bp) 159,040 159,040 150,465 150,465
Minimum length (bp) 500 50,140 500 50,048
(G + C)/(G + C + A + T) (%) 49.88 49.85 49.93 50.11

Reads (>50 kb) were extracted for further analysis of ISEcp1 activities and IS15DI target sites.