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. 2021 Jul 15;50(3):1221–1240. doi: 10.1093/nar/gkab544

Table 2.

Properties of fully deprotected PS dinucleotide diastereomers

Rp a Sp b
Dimer HRMS calc. HRMS found 31P NMRe SVPDf PDIIg HRMS found 31P NMRe SVPDf PDIIg
usu 617.09c 617.09c 56.74 deg. - 617.09c 55.55 no deg. -
usUf 605.07c 605.07c 56.78 deg. - 605.07c 55.68 no deg. -
Ufsu 605.07c 605.07c 56.82 deg. no deg. 605.07c 55.97 no deg. deg.
asa 641.17d 641.17d 57.51 deg. no deg. 641.17d 56.27 no deg. deg.
Afsa 629.15d 629.15d 57.21 deg. no deg. 629.15d 55.40 no deg. deg.
asUf 606.12d 606.12d 57.83 deg. no deg. 606.12d 56.63 no deg. deg.
gsa 657.16d 657.16d 56.07 no deg. deg. 657.16d 57.53 deg. no deg.

aThe Rp diastereomer was the top spot on TLC for all dinucleotides except for gsa.

bThe Sp diastereomer was the lower spot on TLC for all dinucleotides except gsa.

cHRMS, high-resolution mass spectrometry: (M+Na).

dHRMS: (M+H).

eChemical shift (ppm) in 31P NMR spectrum of fully deprotected dinucleotide in D2O.

fSVPD degradation at 48 h time point.

gPDII degradation at 48 h time point. deg. indicates that there was degradation; no deg. indicates no degradation.

Lowercase u, a, and g indicate 2′-OMe nucleosides, lowercase s indicates PS linkage, and Uf and Af indicate 2′-F U and A nucleosides, respectively.