REAGENT or RESOURCE	SOURCE	IDENTIFIER
Antibodies
Anti-NP1	Genscript	U864YFA140-4/CB2093
anti-rabbit IgG	Vector Laboratories	Cat #MP-6401
Goat anti-hamster IgG HRP	KPL	Cat #PA1-29626
Bacterial and virus strains
SARS-CoV-2 isolate SARS-CoV-2/human/USA/WA-CDC-WA1/2020 (WA1)	CDC Atlanta	Genbank Accession MN985325.1
SARS-CoV-2 isolate nCoV-hCoV-19/USA/MD-HP01542/2021 (B.1.351; SA; beta)	Andy Pekosz (Johns Hopkins)	GISAID # EPI_ISL_890360
SARS-CoV-2_2hCOV_19_England_204820464_ 2020 isolate (B.1.1.7; UK; alpha)	BEI Resources	GISAID # EPI_ISL_683466
Critical commercial assays
Rotor-Gene probe kit	Qiagen	Cat #204374
QiaAmp Viral RNA kit	Qiagen	Cat #52906
RNeasy kit	Qiagen	Cat #74004
ChromoMap DAB kit	Roche Tissue Diagnostics	Cat#760-159
Experimental models: Cell lines
Vero E6	Ralph Baric, UNC	N/A
Experimental models: Organisms/strains
Syrian hamster HsdHan:AURA	Envigo	N/A
Oligonucleotides
Subgenomic E primer forward 5’-ACAGGTACGTT AATAGTTAATAGCGT	IDT	N/A
Subgenomic E primer reverse 5’-ATATTGCAGCA GTACGCACACA	IDT	N/A
Subgenomic E probe 5’-FAM-ACACTAGCCATCC TTACTGCGCTTCG-BBQ	IDT	N/A
Software and algorithms
Prism 9	Graphpad	https://www.graphpad.com/scientific-software/prism/