FIG 2.

Details of the assignment of reads to the NCBI taxonomy. For each of the 10 data sets, for the total set of reads assigned by either an AnnoTree run or NCBI run of the DIAMOND+MEGAN pipeline, we show the proportion of reads only assigned by the AnnoTree run (green), assigned by both runs to the same taxon (yellow), or only assigned by the NCBI run (gray). For reads with differing assignments, we show the proportion assigned to incompatible lineages (dotted) or two compatible lineages with either the AnnoTree assignment being more specific (vertical stripes) or the NCBI-nr assignment being more specific (horizontal stripes). On the right, we indicate the total number of reads and the number of reads assigned by either the AnnoTree or NCBI-nr run.