TABLE 5.
Number of prokaryotic accessions in NCBI-nr or AnnoTree that have map to a class in the classification systemsa
| Classification | NCBI-nr (no.) | AnnoTree (no.) | Ratio |
|---|---|---|---|
| NCBI taxonomy | 182,329,414 | 106,052,079 | 1.72 |
| GTDB taxonomy | 126,956,422 | 106,052,079 | 1.2 |
| EC | 4,501,593 | 2,962,187 | 1.51 |
| eggNOG | 4,274,800 | 3,506,041 | 1.21 |
| InterPro | 19,748,423 | 11,069,757 | 1.78 |
| KEGG | 8,218,708b | 56,577,432 | 0.15 |
| SEED | 31,117,272 | 16,183,436 | 1.92 |
a
For two different taxonomical classifications (NCBI and GTDB) and for five different functional classifications (EC, EGG, InterPro, KEGG, and SEED) supported by MEGAN, we report the number of prokaryotic accessions in NCBI-nr or AnnoTree that have a mapping to a class in the classification and the corresponding ratio.
b
MEGAN ultimate edition.