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. 2022 Jan 13;11:e57974. doi: 10.7554/eLife.57974

Table 1. Overview of the β-lactamase enzymes investigated in this study.

Enzymes GES-1, –2 and –11 as well as KPC-2 and –3 belong to the same phylogenetic cluster (GES-42 and KPC-44, respectively, see Supplementary file 1). All other tested enzymes belong to distinct phylogenetic clusters (Supplementary file 1). The ‘Cysteine positions’ column states the positions of cysteine residues after position 30 and hence, does not include amino acids that would be part of the periplasmic signal sequence. All β-lactamase enzymes except L2-1 (shaded in grey; PDB ID: 1O7E) have one disulfide bond. The ‘Mobile’ column refers to the genetic location of the β-lactamase gene; ‘yes’ indicates that the gene of interest is located on a plasmid, while ‘no’ refers to chromosomally encoded enzymes. All tested enzymes have a broad hydrolytic spectrum and are either Extended Spectrum β-Lactamases (ESBLs) or carbapenemases. The ‘Inhibition’ column refers to classical inhibitor susceptibility that is, susceptibility to inhibition by clavulanic acid, tazobactam, or sulbactam.

Enzyme Amblerclass Cysteine positions Mobile Spectrum Inhibition
L2-1 A C82 C136 C233 no ESBL yes
GES-1 A C63 C233 yes ESBL yes
GES-2 A C63 C233 yes ESBL yes
GES-11 A C63 C233 yes Carbapenemase yes
SHV-27 A C73 C119 no ESBL yes
OXA-4 D C43 C63 yes ESBL yes
OXA-10 D C44 C51 yes ESBL no (Aubert et al., 2001)
OXA-198 D C116 C119 yes Carbapenemase no (El Garch et al., 2011)
FRI-1 A C68 C238 yes Carbapenemase no (Dortet et al., 2015)
L1-1 B3 C239 C267 no Carbapenemase no (Palzkill, 2013)
KPC-2 A C68 C237 yes Carbapenemase no (Papp-Wallace et al., 2010)
KPC-3 A C68 C237 yes Carbapenemase no (Papp-Wallace et al., 2010)
SME-1 A C72 C242 no Carbapenemase yes