Table 1.
Basic statistic information of draft assembly from Canu, SMARTdenovo and Flye
| Assembly method |
Canu | SMART denovo |
Flye | ||
|---|---|---|---|---|---|
|
Corrected error rate |
0.045 | 0.065 | 0.085 | - | - |
| Contigs | 301 | 301 | 280 | 277,164 | 177 |
| Contigs (>=50 kb) | 174 | 174 | 168 | 170 | 60 |
|
Total contigs length |
62,453k | 62,451k | 62,870k | 3,850,300k | 59,663k |
|
Total contigs length (>=50 kb) |
59,418k | 59,416k | 59,802k | 9,340k | 59,004k |
|
Longest contig |
2,495k | 2,495k | 2,723k | 77k | 11,601k |
|
GC content (%) |
48.46 | 48.48 | 48.44 | 48.21 | 48.43 |
| N50 | 512k | 521k | 614k | 16k | 3,513k |
| #N’s per 100 kbp | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |