Table 1.
Common variants among inoculated and direct contact groups. Nine variants were identified in common among inoculated and contact quails: PB2 a934g (T303A) and g2327t; PB1 a1949c (N642T); PA a100g (K26E), a891g; NP t1491c, c1550t; NS a26g, and g742a (NEP, E67K). Nonsynonymous mutations are shown between brackets.
| EXPOSURE | PB2 | PB1 | PA | HAb | NP | NA | M1 | M2 | NS1 | NEP |
|---|---|---|---|---|---|---|---|---|---|---|
| IINOCULATED | g164c (R46T) | t165g (H47Q) | a100g (K26E) | c981t | a26g (1M)a,c | g742a (E67K) | ||||
| a934g (T303A) | a634g (T204A) | a891g | t1491c | g118a (M33I) | ||||||
| a1604g (K527R) | a1766c/g (E581A/G) | bld | c1550ta | bld | bld | |||||
| g2049t | a1949c (N642T) | |||||||||
| g2327ta | ||||||||||
| CONTACTS | a934g (T303A) | t1014a | a100g (K26E) | a625g (E190V/G) | c1344t | a26g (−1M)a | g742a (E67K) | |||
| g2327ta | a1949c (N642T) | g589a (D189N) | g1032t (A325S) | t1491c | bld | bld | bld | t437c | ||
| a2292g | a891g | c1550ta | ||||||||
| g1003a (E327K) |
aShows variant sites at UTRs.
b
None 226 sites in HA.
c
Mutation introduced new start codon at −1 position from canonical start codon. The legend bld corresponds to below limit of detection.