TABLE 1.
mRNA levels of genes related to H1-T6SS in ΔnrtR compared to those in PAK identified via RNAseq (57)
| Gene ID | Gene name | Fold change (ΔnrtR/PAK) | Description |
|---|---|---|---|
| PA0070 | tagQ1 | 5.2 | TagQ1 |
| PA0072 | tagS1 | 5.7 | TagS1 |
| PA0073 | tagT1 | 5.3 | TagT1 |
| PA0074 | ppkA | 5.7 | Serine/threonine protein kinase PpkA |
| PA0075 | pppA | 7.5 | PppA |
| PA0076 | tagF1 | 6.1 | TagF1 |
| PA0077 | icmF1 | 10.5 | IcmF1 |
| PA0078 | tssL1 | 11.4 | TssL1 |
| PA0079 | tssK1 | 11.8 | TssK1 |
| PA0080 | tssJ1 | 9.1 | TssJ1 |
| PA0082 | tssA1 | 9.6 | TssA1 |
| PA0083 | tssB1 | 20.8 | TssB1 |
| PA0084 | tssC1 | 18.0 | TssC1 |
| PA0085 | hcp1 | 21.1 | Hcp1 |
| PA0086 | tagJ1 | 21.4 | TagJ1 |
| PA0087 | tssE1 | 20.7 | TssE1 |
| PA0088 | tssF1 | 29.5 | TssF1 |
| PA0089 | tssG1 | 32.6 | TssG1 |
| PA0090 | clpV1 | 17.5 | ClpV1 |
| PA0091 | vgrG1 | 17.4 | VgrG1 |
| PA0092 | tsi6 | 5.8 | Tsi6 |
| PA0093 | tse6 | 15.4 | Tse6 |
| PA0096a | 8.9 | Hypothetical protein | |
| PA0097a | 5.0 | Hypothetical protein | |
| PA1844 | tse1 | 9.2 | Tse1 |
| PA1845 | tsi1 | 9.5 | Tsi1 |
| PA2684 | tse5 | 6.0 | Tse5 |
| PA2774 | tse4 | 7.7 | Tse4 |
| PA3484 | tse3 | 9.0 | Tse3 |
| PA3485 | tsi3 | 7.2 | Tsi3 |
a
Genes located in the vgrG1b cluster (57).