TABLE 2.
Summary of the annotated genes of four nearly complete T. camphoratus/A. cinnamomea (Ac) genome sequences
| Strain | W1 | W2 | V5 | V7 |
|---|---|---|---|---|
| Locus_tag | AcW1 | AcW2 | AcV5 | AcV7 |
| Genome (bps) | 33,373,109 | 33,571,907 | 32,855,596 | 33,286,329 |
| BUSCO genome metrics | 96.1 % | 95.8 % | 95.9 % | 96.2 % |
| BUSCO protein metrics | 94.6 % | 96.6 % | 95.9 % | 96.2 % |
| Distinct protein encoding genes | 10,247 | 10,273 | 10,401 | 10,308 |
| Total proteins | 14,019 | 13,965 | 14,141 | 14,055 |
| tRNAs | 75 | 73 | 72 | 87 |
| LncRNAs | 3,835 | 3,808 | 3,530 | 4,007 |
| Transcription factors | 427 | 438 | 442 | 418 |
| Proteins with predicted signal peptide | 650 | 648 | 651 | 639 |
| Carbohydrate-Active enZymes (CAZymes) | ||||
| Auxiliary activity (AA) | 25 | 27 | 28 | 25 |
| Carbohydrate-binding modules (CBM) | 3 | 5 | 5 | 6 |
| Carbohydrate esterases (CE) | 5 | 7 | 7 | 7 |
| Glycoside hydrolases (GH) | 105 | 112 | 109 | 111 |
| Glycosyl transferases (GT) | 49 | 48 | 51 | 49 |
| Polysaccharide lyases (PL) | 3 | 3 | 3 | 2 |
| CAZyme gene clusters (CAZ-GCs) | 2 | 5 | 3 | 6 |
| Secondary metabolism (SM) biosynthetic enzymes | ||||
| NRPS | 2 | 2 | 2 | 2 |
| PKS/NRPS-like protein | 8 | 7 | 7 | 7 |
| Hybrid PKS-NRPS | 1 | 1 | 1 | 1 |
| NRPS-like protein | 8 | 6 | 5 | 7 |
| Type I Iterative PKS | 4 | 4 | 5 | 4 |
| CYP | 74 | 75 | 79 | 77 |
| SM biosynthetic gene clusters (SM-BGCs) | 26 | 25 | 26 | 26 |