1 |
In the absence of unified datasets, it was assumed that published parameters from different animals (mouse/rat, strain, sex, age) can be used together to build a general model. |
2 |
Connection probabilities were assumed to depend only on the presynaptic cell type and to be independent of distance. |
3 |
Each pyramidal cell was assumed to have a place field in any given environment with a probability of 50%. For simplicity, multiple place fields were not allowed. |
4 |
When constructing the ‘teaching spike trains’ during simulated exploration, place fields were assumed to have a uniform size, tuning curve shape, and maximum firing rate. |
5 |
For simplicity, all synaptic interactions in the network were modeled as deterministic conductance changes. Short-term plasticity was not included, and long-term plasticity was assumed to operate only in the learning phase. |
6 |
When considering the nonspecific drive to the network in the offline state, it was assumed that the external input can be modeled as uncorrelated random spike trains (one per cell) activating strong synapses (representing the mossy fibers) in the pyramidal cell population. |
7 |
Some fundamental assumptions are inherited from common practices in computational neuroscience; these include modeling spike trains as Poisson processes, capturing weight changes with additive spike-timing-dependent plasticity, describing cells with single-compartmental AdExpIF models, modeling a neuronal population with replicas of a single model, and representing synapses with conductance-based models with biexponential kinetics. |
8 |
When comparing our model to in vivo data, an implicit assumption was that the behavior of a simplified model based on slice constraints can generalize to the observed behavior of the full CA3 region in vivo, in the context of studying the link between activity-dependent plasticity and network dynamics. |