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. Author manuscript; available in PMC: 2022 Feb 24.
Published in final edited form as: J Phys Chem B. 2016 Jul 1;120(33):8617–8630. doi: 10.1021/acs.jpcb.6b02666

Table 4:

Distance between the chelating oxygens and the Mg2+ or Ca2+ ions. Distances are listed with standard deviations obtained from averaging across 50,000 frames of one run. Our MD results compared against crystal structure distances (denoted by 4PAL9 for Mg2+ and 1RRO34 for Ca2+).

Residue Pike PV/Mg Simulation bPV/Mg Rat bPV/Ca Simulation bPV/Ca

(D51/D51) N/A 1.9 ± 0.05 2.3 2.2 ± 0.05
(D53/D53) N/A 1.8 ± 0.04 2.3 2.2 ± 0.05
(S55/S55) N/A 5.0 ± 0.59 2.6 2.6± 0.14
(F57/Y57)* N/A 3.9 ± 0.25 2.3 2.3 ± 0.08
(E59/D59) N/A 5.2 ± 1.42 4.6 2.2 ± 0.05
(E62/E62 Oϵ1) N/A 1.9 ± 0.06 2.5 2.2± 0.07 (see Fig. S8)
(E62/E62 Oϵ2) N/A 1.9 ± 0.07 2.5 2.3 ± 0.09 (see Fig. S8)

(D90/D90) 2.1 1.8 ± 0.04 2.3 2.2 ± 0.05
(D92/D92) 2.1 1.8 ± 0.04 2.3 2.2 ± 0.06
(D94/D94) 2.2 1.9 ± 0.06 2.4 2.2 ± 0.06
(M96/K96)* 2.1 2.3 ± 0.17 2.4 2.4 ± 0.10
(G98/G98-WAT) 6.4 6.5 ± 0.18 6.7 6.9 ± 0.20
(E101/E101 Oϵ1) 2.0 1.9 ± 0.08 2.5 2.3 ± 0.07 (see Fig. S9)
(E101/E101 Oϵ2) 3.4 3.3 ± 0.06 2.5 2.4± 0.12 (see Fig. S9)

Asterisks indicate residues coordinating with backbone oxygens.