AIV	Avian influenza virus
HPAI	High pathogenic avian influenza
LPAI	Low pathogenic avian influenza
dpi	Days post infection
DEG	Differentially expressed gene
TF	Transcription factor
TFBS	Transcription factor binding site
TSS	Transcription start site
BP	Base pairs
FDR	False discovery rate
LFC	Log${}_2$ fold change
GO	Gene Ontology
PMI	Pointwise mutual information
PWM	Position weight matrix
IFN	Interferon
IRF	Interferon regulatory factor
ISG	Interferon-stimulated gene
STAT	Signal transducer and activator of transcription
RLR	RIG-I-like receptor
FOX	Forkhead box
HOX	Homeobox
JAK	Janus–kinase