Table 2.

Differential Expression Analysis Module.

	App Function	Description
DEA1	Volcano Plot	User selects comparison groups Differential gene expression analysis with LIMMA Up- and downregulated differentially expressed genes determined with user input
DEA2	MA Plot	User selects comparison groups Differential gene expression analysis with LIMMA Up- and downregulated differentially expressed genes determined with user input
DEA4	Pathway Enrichment Analysis	User selects comparison groups and gene set/pathway Differential gene expression analysis with LIMMA Pathway enrichment analysis using enrichR