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. 2022 Jan 18;24(2):141. doi: 10.3390/e24020141

Figure 2.

Figure 2

Gene regulatory network dynamic with N=3 genes. The dynamic was generated using a random interaction matrix Jij. The top panel shows the continuous time trace of proteins concentration for a random GRN with nr=na=0.2. The bottom panel shows the oscillatory dynamic of 3 genes relative to the core clock of an oscillatory network. In both panels, dots show the prediction of the neural network implemented using the first T=10 time points and then letting the system evolve on its own. The stochastic data were generated using the Gillespie algorithm.