Table 2.
Characteristics of the CSIs specific for different suborders of Rodentia.
| Protein Name | Accession No. | Figure Number | Indel Size | Indel Location | Specificity |
|---|---|---|---|---|---|
| vasopressin V1a receptor | 74146437 |
Figure 4A Figure S8 |
2 aa Ins | 176–215 | Myomorpha |
| nck-associated protein 5-like isoform X1 | XP_006521185 | Figure S9 | 1 aa Del | 584–619 | |
| ATP-dependent DNA helicase DDX11 isoform 1 | NP_001335221 | Figure S10 | 3 aa Ins | 481–514 | |
| F-actin-uncapping protein LRRC16A | BAC31591 | Figure S11 | 1 aa Del | 1150–1174 | |
| zinc finger E-box-binding homeobox 1 | XP_030106271 |
Figure 4B Figure S12 |
1 aa Del | 737–775 | Castorimorpha |
| cAMP-responsive element modulator | XP_030106165 | Figure S13 | 1 aa Del | 150–186 | |
| leukocyte elastase inhibitor A | EDL32356 |
Figure 5A Figure S14 |
2 aa Del | 242–277 | Hystricomorpha |
| sterol regulatory element-binding protein cleavage-activating protein | AAH70437 | Figure S15 | 1 aa Del | 1040–1077 | |
| early endosome antigen 1 isoform X1 | XP_006513587 | Figure S16 | 1 aa Del | 58–91 | |
| tudor domain-containing protein 1 | NP_001002238 | Figure S17 | 1 aa Del | 42–74 | |
| tudor domain-containing protein 1 | AAI29955 | Figure S18 | 6 aa Del | 669–703 | |
| autophagy-related protein 9A isoform a | XP_011236992 | Figure S19 | 2 aa Ins | 659–687 | |
| probable small intestine urate exporter | XP_006516763 | Figure S20 | 2 aa Ins | 429–469 | |
| ryanodine receptor 2 | NP_076357 |
Figure 5B Figure S21 |
1 aa Del | 1326–28 | Sciuromorpha |
| A disintegrin and metallo-proteinase with thrombospondin motifs 13 isoform 1 preproprotein | NP_001001322 | Figure S22 | 2 aa Del | 1072–1109 | |
| telomerase-binding protein EST1A | EDL12790 | Figure S23 | 1 aa Del | 472–503 | |
| oxysterol-binding protein-related protein 8 isoform b | XP_006513700 | Figure S24 | 1 aa Ins | 816–844 | |
| rab-3A-interacting protein isoform 2 | NP_001003950 | Figure S25 | 1 aa Del | 36–67 | |
| dual specificity protein phosphatase CDC14B | XP_036013890 | Figure S26 | 2 aa Ins | 335–370 | |
| zinc finger protein 385A | NP_038894 | Figure S27 | 1 aa Del | 7–44 | |
| rho family-interacting cell polarization regulator 2 | BAE37527 | Figure S28 | 1 aa Ins | 336–371 | |
| rho family-interacting cell polarization regulator 2 | XP_006516650 | Figure S29 | 5 aa Del | 587–625 | |
| ATP-dependent DNA helicase DDX11 isoform 1 | XP_006524473 |
Figure 6
Figure S30 |
1 aa Del | 262–289 | Myomorpha and Castorimorpha |
| voltage-dependent L-type calcium channel subunit beta-2 | XP_006497377 | Figure S31 | 1 aa Ins | 375–401 |