Table 1.
Annotated genes in the C. cathayensis cp genome.
| Category | Group of Genes | Name of Gene |
|---|---|---|
| Self-replication | Ribosomal RNA | rrn4.5 3, rrn5 3, rrn16 3, rrn23 3 |
| Transfer RNA | trnY-GUA, trnW-CCA, trnV-UAC 1, trnV-GAC 3, trnT-UGU, trnT-GGU, trnS-UGA, trnS-GGA, trnS-GCU, trnR-UCU, trnR-ACG 3, trnQ-UUG, trnP-UGG, trnN-GUU 3, trnM-CAU, trnL-UAG, trnL-UAA 1, trnL-CAA 3, trnK-UUU 1, trnI-GAU 1,3, trnI-CAU 3, trnH-GUG, trnG-UCC, trnG-GCC 1, trnfM-CAU 4, trnF-GAA, trnE-UUC, trnD-GUC, trnC-GCA, RNA-UGC 1,3 | |
| Small subunit of ribosome | rps2, rps3, rps4, rps7 3, rps8, rps11, rps12 2,3, rps14, rps15, rps16 1, rps18, rps19 | |
| Large subunit of ribosome | rpl2 1,3, rpl14, rpl16 1, rpl20, rpl22, rpl23 3, rpl32, rpl33, rpl36 | |
| RNA polymerase subunits | rpoA, rpoB, rpoC1 1, rpoC2 | |
| Subunits of photosystem I | psaA, psaB, psaC, psaI, psaJ | |
| Subunits of photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT | |
| Photosynthesis | Subunits of cytochrome | petA, petB 1, petD 1, petG, petL, petN |
| Subunits of ATP synthase | atpA, atpB, atpE, atpF 1, atpH, atpI | |
| Large subunit of RuBisCO | rbcL | |
| Subunits of NADH | ndhA 1, ndhB 1,3, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
| Other gene | Maturase | matK |
| Envelope membrane protein | cemA | |
| Subunit of acetyl-CoA | accD | |
| C-type cytochrome synthesis gene | ccsA | |
| Protease | clpP 2 | |
| Unknown function | Conserved open reading frames | ycf1, ycf2 3, ycf3 2, ycf4, ihbA |
1 Gene containing a single intron; 2 gene containing two introns; 3 two gene copies in the IRs; 4 duplicated gene in the LSC region.